Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 PCDHA1-201ENST00000378133 2726 ntBASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAIPQ9BWF2 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 CYP4F24P-201ENST00000586049 1580 ntBASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 AC092337.1-201ENST00000568699 1129 ntBASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 AL592424.1-201ENST00000563624 1536 ntBASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 MST1L-201ENST00000442552 2185 ntBASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.55■□□□□ 0.4
TRAIPQ9BWF2 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 AC098614.1-201ENST00000368528 745 ntBASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 MEP1AP4-201ENST00000423244 1087 ntBASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 GNAQP1-201ENST00000444815 1067 ntBASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 EEF1DP4-201ENST00000446006 880 ntBASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 SPDYE18-201ENST00000510091 1050 ntBASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 AC099568.2-201ENST00000609194 695 ntBASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 AC004461.2-201ENST00000629517 803 ntBASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 AL136982.4-201ENST00000437689 1740 ntBASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
TRAIPQ9BWF2 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAIPQ9BWF2 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms