Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 AC134684.3-201ENST00000641758 218 ntBASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC65Q8IXS2 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 PAUPAR-201ENST00000630360 2965 ntBASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 AC004987.2-201ENST00000395959 1148 ntBASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 CNN2P11-201ENST00000429351 262 ntBASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 ZBTB45P2-201ENST00000452245 1531 ntBASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 AC004967.1-201ENST00000453589 447 ntBASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 GATD1-206ENST00000526325 756 ntTSL 5 BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 AC009093.7-201ENST00000623853 1223 ntBASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC65Q8IXS2 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 AL353705.2-201ENST00000428243 662 ntBASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 GPS2P2-201ENST00000430745 888 ntBASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 METTL23-205ENST00000588302 925 ntTSL 5 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 AC018529.1-201ENST00000613063 361 ntBASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 PRAL-201ENST00000624952 3286 ntBASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC65Q8IXS2 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms