Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CIITAP33076 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CIITAP33076 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CIITAP33076 AC018892.3-201ENST00000623986 2499 ntBASIC18.03■□□□□ 0.48
CIITAP33076 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CIITAP33076 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CIITAP33076 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC18.03■□□□□ 0.48
CIITAP33076 AC236430.1-201ENST00000402231 743 ntBASIC18.03■□□□□ 0.48
CIITAP33076 RASL12-203ENST00000434605 982 ntTSL 2 BASIC18.03■□□□□ 0.48
CIITAP33076 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CIITAP33076 SPTLC1P1-201ENST00000447199 261 ntBASIC18.03■□□□□ 0.48
CIITAP33076 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC18.03■□□□□ 0.48
CIITAP33076 SERBP1P5-201ENST00000510079 1181 ntBASIC18.03■□□□□ 0.48
CIITAP33076 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CIITAP33076 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC18.03■□□□□ 0.48
CIITAP33076 AC135586.1-201ENST00000539323 574 ntBASIC18.03■□□□□ 0.48
CIITAP33076 AC092337.1-201ENST00000568699 1129 ntBASIC18.03■□□□□ 0.48
CIITAP33076 MIR3197-201ENST00000582241 73 ntBASIC18.03■□□□□ 0.48
CIITAP33076 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC18.03■□□□□ 0.48
CIITAP33076 LINC02560-201ENST00000596379 459 ntBASIC18.03■□□□□ 0.48
CIITAP33076 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC18.03■□□□□ 0.48
CIITAP33076 AC008761.3-201ENST00000624803 892 ntBASIC18.03■□□□□ 0.48
CIITAP33076 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CIITAP33076 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC18.03■□□□□ 0.48
CIITAP33076 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CIITAP33076 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CIITAP33076 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CIITAP33076 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CIITAP33076 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CIITAP33076 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
CIITAP33076 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CIITAP33076 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC18.03■□□□□ 0.48
CIITAP33076 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
CIITAP33076 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CIITAP33076 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CIITAP33076 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CIITAP33076 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.02■□□□□ 0.48
CIITAP33076 SUPT20HL2-201ENST00000486479 2409 ntBASIC18.02■□□□□ 0.48
CIITAP33076 GRN-214ENST00000589265 1632 ntTSL 5 BASIC18.02■□□□□ 0.48
CIITAP33076 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CIITAP33076 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CIITAP33076 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CIITAP33076 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
CIITAP33076 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CIITAP33076 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CIITAP33076 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.48
CIITAP33076 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CIITAP33076 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CIITAP33076 RAC2-202ENST00000401529 569 ntTSL 4 BASIC18.02■□□□□ 0.48
CIITAP33076 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC18.02■□□□□ 0.48
CIITAP33076 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC18.02■□□□□ 0.48
CIITAP33076 RPL13P2-201ENST00000440687 659 ntBASIC18.02■□□□□ 0.48
CIITAP33076 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CIITAP33076 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18.02■□□□□ 0.48
CIITAP33076 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC18.02■□□□□ 0.48
CIITAP33076 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CIITAP33076 VILL-207ENST00000465644 1857 ntTSL 5 BASIC18.02■□□□□ 0.48
CIITAP33076 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.02■□□□□ 0.48
CIITAP33076 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC18.02■□□□□ 0.48
CIITAP33076 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC18.02■□□□□ 0.48
CIITAP33076 AC004790.1-201ENST00000612686 536 ntBASIC18.02■□□□□ 0.48
CIITAP33076 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
CIITAP33076 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
CIITAP33076 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CIITAP33076 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CIITAP33076 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CIITAP33076 DOC2GP-204ENST00000639052 2548 ntBASIC18.02■□□□□ 0.47
CIITAP33076 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CIITAP33076 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC18.01■□□□□ 0.47
CIITAP33076 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CIITAP33076 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CIITAP33076 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CIITAP33076 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CIITAP33076 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC18.01■□□□□ 0.47
CIITAP33076 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CIITAP33076 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CIITAP33076 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC18.01■□□□□ 0.47
CIITAP33076 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CIITAP33076 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CIITAP33076 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CIITAP33076 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CIITAP33076 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CIITAP33076 OARD1-208ENST00000469104 704 ntTSL 2 BASIC18.01■□□□□ 0.47
CIITAP33076 SPDYE18-201ENST00000510091 1050 ntBASIC18.01■□□□□ 0.47
CIITAP33076 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CIITAP33076 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CIITAP33076 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC18.01■□□□□ 0.47
CIITAP33076 ARL16-202ENST00000570561 768 ntTSL 2 BASIC18.01■□□□□ 0.47
CIITAP33076 RNA5-8SN1-201ENST00000610460 153 ntBASIC18.01■□□□□ 0.47
CIITAP33076 RNA5-8SN5-202ENST00000612463 153 ntBASIC18.01■□□□□ 0.47
CIITAP33076 RNA5-8SN4-201ENST00000613359 153 ntBASIC18.01■□□□□ 0.47
CIITAP33076 RNA5-8SN5-201ENST00000619471 153 ntBASIC18.01■□□□□ 0.47
CIITAP33076 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC18.01■□□□□ 0.47
CIITAP33076 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CIITAP33076 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC18.01■□□□□ 0.47
CIITAP33076 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CIITAP33076 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CIITAP33076 TDG-209ENST00000544861 1387 ntTSL 2 BASIC18.01■□□□□ 0.47
CIITAP33076 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC18.01■□□□□ 0.47
CIITAP33076 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms