Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.98■□□□□ 0.63
HMGB1P09429 AP006288.1-201ENST00000446065 395 ntBASIC18.98■□□□□ 0.63
HMGB1P09429 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB1P09429 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC18.98■□□□□ 0.63
HMGB1P09429 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB1P09429 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
HMGB1P09429 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.98■□□□□ 0.63
HMGB1P09429 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB1P09429 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB1P09429 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB1P09429 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB1P09429 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC18.98■□□□□ 0.63
HMGB1P09429 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB1P09429 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB1P09429 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB1P09429 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB1P09429 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB1P09429 REXO1L1P-202ENST00000608646 1974 ntBASIC18.97■□□□□ 0.63
HMGB1P09429 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
HMGB1P09429 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
HMGB1P09429 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
HMGB1P09429 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC18.97■□□□□ 0.63
HMGB1P09429 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
HMGB1P09429 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB1P09429 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC18.97■□□□□ 0.63
HMGB1P09429 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB1P09429 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC18.97■□□□□ 0.63
HMGB1P09429 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB1P09429 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
HMGB1P09429 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.97■□□□□ 0.63
HMGB1P09429 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC18.97■□□□□ 0.63
HMGB1P09429 GPS2P2-201ENST00000430745 888 ntBASIC18.97■□□□□ 0.63
HMGB1P09429 RBPMS2P1-201ENST00000437762 623 ntBASIC18.97■□□□□ 0.63
HMGB1P09429 EEF1DP4-201ENST00000446006 880 ntBASIC18.97■□□□□ 0.63
HMGB1P09429 AC023141.5-201ENST00000458585 616 ntBASIC18.97■□□□□ 0.63
HMGB1P09429 MDH2-205ENST00000461263 648 ntTSL 2 BASIC18.97■□□□□ 0.63
HMGB1P09429 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC18.97■□□□□ 0.63
HMGB1P09429 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.97■□□□□ 0.63
HMGB1P09429 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.97■□□□□ 0.63
HMGB1P09429 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC18.97■□□□□ 0.63
HMGB1P09429 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
HMGB1P09429 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.97■□□□□ 0.63
HMGB1P09429 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.97■□□□□ 0.63
HMGB1P09429 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC18.97■□□□□ 0.63
HMGB1P09429 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC18.97■□□□□ 0.63
HMGB1P09429 METTL23-205ENST00000588302 925 ntTSL 5 BASIC18.97■□□□□ 0.63
HMGB1P09429 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
HMGB1P09429 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB1P09429 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB1P09429 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB1P09429 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB1P09429 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
HMGB1P09429 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
HMGB1P09429 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC18.97■□□□□ 0.63
HMGB1P09429 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB1P09429 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC18.97■□□□□ 0.63
HMGB1P09429 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC18.96■□□□□ 0.63
HMGB1P09429 MST1L-201ENST00000442552 2185 ntBASIC18.96■□□□□ 0.63
HMGB1P09429 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC18.96■□□□□ 0.63
HMGB1P09429 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC18.96■□□□□ 0.63
HMGB1P09429 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB1P09429 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB1P09429 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC18.96■□□□□ 0.63
HMGB1P09429 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.96■□□□□ 0.63
HMGB1P09429 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
HMGB1P09429 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB1P09429 LRRFIP1P1-201ENST00000498774 2246 ntBASIC18.96■□□□□ 0.63
HMGB1P09429 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB1P09429 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB1P09429 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB1P09429 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
HMGB1P09429 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB1P09429 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
HMGB1P09429 CD81-202ENST00000381036 880 ntTSL 3 BASIC18.96■□□□□ 0.63
HMGB1P09429 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC18.96■□□□□ 0.63
HMGB1P09429 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.96■□□□□ 0.63
HMGB1P09429 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18.96■□□□□ 0.63
HMGB1P09429 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
HMGB1P09429 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC18.96■□□□□ 0.63
HMGB1P09429 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.96■□□□□ 0.63
HMGB1P09429 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC18.96■□□□□ 0.63
HMGB1P09429 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB1P09429 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
HMGB1P09429 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC18.96■□□□□ 0.63
HMGB1P09429 KRT8P37-201ENST00000451609 1420 ntBASIC18.96■□□□□ 0.63
HMGB1P09429 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
HMGB1P09429 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB1P09429 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB1P09429 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB1P09429 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC18.96■□□□□ 0.63
HMGB1P09429 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
HMGB1P09429 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB1P09429 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB1P09429 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB1P09429 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB1P09429 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB1P09429 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB1P09429 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.96■□□□□ 0.63
HMGB1P09429 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC18.95■□□□□ 0.62
HMGB1P09429 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms