Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL2A1P02458 AC124067.4-201ENST00000519691 2379 ntBASIC18.5■□□□□ 0.55
COL2A1P02458 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC18.5■□□□□ 0.55
COL2A1P02458 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
COL2A1P02458 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL2A1P02458 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL2A1P02458 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC18.5■□□□□ 0.55
COL2A1P02458 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL2A1P02458 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
COL2A1P02458 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
COL2A1P02458 CSF2RBP1-201ENST00000447905 391 ntBASIC18.5■□□□□ 0.55
COL2A1P02458 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC18.5■□□□□ 0.55
COL2A1P02458 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC18.5■□□□□ 0.55
COL2A1P02458 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL2A1P02458 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL2A1P02458 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
COL2A1P02458 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC18.5■□□□□ 0.55
COL2A1P02458 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL2A1P02458 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC18.5■□□□□ 0.55
COL2A1P02458 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL2A1P02458 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL2A1P02458 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL2A1P02458 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL2A1P02458 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL2A1P02458 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL2A1P02458 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL2A1P02458 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC18.49■□□□□ 0.55
COL2A1P02458 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL2A1P02458 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL2A1P02458 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL2A1P02458 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL2A1P02458 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC18.49■□□□□ 0.55
COL2A1P02458 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC18.49■□□□□ 0.55
COL2A1P02458 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
COL2A1P02458 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC18.49■□□□□ 0.55
COL2A1P02458 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC18.49■□□□□ 0.55
COL2A1P02458 AL583810.1-201ENST00000553344 1045 ntBASIC18.49■□□□□ 0.55
COL2A1P02458 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC18.49■□□□□ 0.55
COL2A1P02458 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC18.49■□□□□ 0.55
COL2A1P02458 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL2A1P02458 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC18.49■□□□□ 0.55
COL2A1P02458 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.49■□□□□ 0.55
COL2A1P02458 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL2A1P02458 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL2A1P02458 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
COL2A1P02458 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL2A1P02458 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL2A1P02458 REXO1L6P-201ENST00000603433 1515 ntBASIC18.49■□□□□ 0.55
COL2A1P02458 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.49■□□□□ 0.55
COL2A1P02458 AC012313.1-201ENST00000593393 3059 ntBASIC18.48■□□□□ 0.55
COL2A1P02458 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
COL2A1P02458 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL2A1P02458 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL2A1P02458 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
COL2A1P02458 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL2A1P02458 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC18.48■□□□□ 0.55
COL2A1P02458 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL2A1P02458 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
COL2A1P02458 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
COL2A1P02458 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
COL2A1P02458 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL2A1P02458 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL2A1P02458 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
COL2A1P02458 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC18.48■□□□□ 0.55
COL2A1P02458 AC079316.1-201ENST00000548397 411 ntBASIC18.48■□□□□ 0.55
COL2A1P02458 GPR39-203ENST00000622084 900 ntTSL 5 BASIC18.48■□□□□ 0.55
COL2A1P02458 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL2A1P02458 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
COL2A1P02458 HADH-212ENST00000638621 741 ntTSL 5 BASIC18.48■□□□□ 0.55
COL2A1P02458 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL2A1P02458 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL2A1P02458 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC18.48■□□□□ 0.55
COL2A1P02458 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL2A1P02458 AC020763.4-201ENST00000623414 4170 ntBASIC18.48■□□□□ 0.55
COL2A1P02458 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL2A1P02458 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC18.48■□□□□ 0.55
COL2A1P02458 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL2A1P02458 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.48■□□□□ 0.55
COL2A1P02458 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
COL2A1P02458 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL2A1P02458 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
COL2A1P02458 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.47■□□□□ 0.55
COL2A1P02458 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC18.47■□□□□ 0.55
COL2A1P02458 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL2A1P02458 FAM86MP-201ENST00000340703 885 ntBASIC18.47■□□□□ 0.55
COL2A1P02458 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
COL2A1P02458 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
COL2A1P02458 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC18.47■□□□□ 0.55
COL2A1P02458 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
COL2A1P02458 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC18.47■□□□□ 0.55
COL2A1P02458 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
COL2A1P02458 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
COL2A1P02458 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL2A1P02458 AC244669.2-201ENST00000612320 853 ntBASIC18.47■□□□□ 0.55
COL2A1P02458 RHOXF1P1-202ENST00000635473 501 ntBASIC18.47■□□□□ 0.55
COL2A1P02458 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL2A1P02458 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL2A1P02458 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL2A1P02458 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL2A1P02458 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms