Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 MTHFR-217ENST00000641820 1569 ntBASIC15.53■□□□□ 0.08
VMP1Q96GC9 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
VMP1Q96GC9 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
VMP1Q96GC9 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
VMP1Q96GC9 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
VMP1Q96GC9 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.52■□□□□ 0.08
VMP1Q96GC9 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VMP1Q96GC9 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VMP1Q96GC9 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VMP1Q96GC9 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
VMP1Q96GC9 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.52■□□□□ 0.08
VMP1Q96GC9 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
VMP1Q96GC9 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
VMP1Q96GC9 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
VMP1Q96GC9 ADH5P3-201ENST00000433842 1137 ntBASIC15.52■□□□□ 0.08
VMP1Q96GC9 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
VMP1Q96GC9 DNAJB3-202ENST00000449667 1266 ntBASIC15.52■□□□□ 0.08
VMP1Q96GC9 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.52■□□□□ 0.08
VMP1Q96GC9 RN7SL589P-201ENST00000481268 310 ntBASIC15.52■□□□□ 0.08
VMP1Q96GC9 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.52■□□□□ 0.08
VMP1Q96GC9 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC15.52■□□□□ 0.08
VMP1Q96GC9 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC15.52■□□□□ 0.08
VMP1Q96GC9 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.52■□□□□ 0.08
VMP1Q96GC9 AL139011.1-202ENST00000642063 584 ntBASIC15.52■□□□□ 0.08
VMP1Q96GC9 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VMP1Q96GC9 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
VMP1Q96GC9 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
VMP1Q96GC9 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
VMP1Q96GC9 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
VMP1Q96GC9 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
VMP1Q96GC9 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.52■□□□□ 0.07
VMP1Q96GC9 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
VMP1Q96GC9 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
VMP1Q96GC9 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.52■□□□□ 0.07
VMP1Q96GC9 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
VMP1Q96GC9 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.52■□□□□ 0.07
VMP1Q96GC9 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.52■□□□□ 0.07
VMP1Q96GC9 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.52■□□□□ 0.07
VMP1Q96GC9 AC022532.1-201ENST00000624563 1728 ntBASIC15.51■□□□□ 0.07
VMP1Q96GC9 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.51■□□□□ 0.07
VMP1Q96GC9 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC15.51■□□□□ 0.07
VMP1Q96GC9 AKAP8P1-201ENST00000434743 1349 ntBASIC15.51■□□□□ 0.07
VMP1Q96GC9 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.51■□□□□ 0.07
VMP1Q96GC9 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
VMP1Q96GC9 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
VMP1Q96GC9 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.51■□□□□ 0.07
VMP1Q96GC9 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 SPDYE11-202ENST00000450699 704 ntBASIC15.51■□□□□ 0.07
VMP1Q96GC9 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.51■□□□□ 0.07
VMP1Q96GC9 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.51■□□□□ 0.07
VMP1Q96GC9 AP000344.2-201ENST00000512987 629 ntBASIC15.51■□□□□ 0.07
VMP1Q96GC9 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC15.51■□□□□ 0.07
VMP1Q96GC9 SPDYE9P-201ENST00000570642 692 ntBASIC15.51■□□□□ 0.07
VMP1Q96GC9 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC15.51■□□□□ 0.07
VMP1Q96GC9 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.51■□□□□ 0.07
VMP1Q96GC9 AP001160.2-201ENST00000596071 487 ntBASIC15.51■□□□□ 0.07
VMP1Q96GC9 AC026120.1-201ENST00000611536 926 ntBASIC15.51■□□□□ 0.07
VMP1Q96GC9 SPDYE10P-202ENST00000612005 668 ntBASIC15.51■□□□□ 0.07
VMP1Q96GC9 SPDYE8P-202ENST00000612377 668 ntBASIC15.51■□□□□ 0.07
VMP1Q96GC9 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
VMP1Q96GC9 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.51■□□□□ 0.07
VMP1Q96GC9 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
VMP1Q96GC9 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms