Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC19.85■□□□□ 0.77
COL5A3P25940 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL5A3P25940 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC19.85■□□□□ 0.77
COL5A3P25940 AC073413.1-201ENST00000603927 732 ntBASIC19.85■□□□□ 0.77
COL5A3P25940 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC19.85■□□□□ 0.77
COL5A3P25940 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC19.85■□□□□ 0.77
COL5A3P25940 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC19.85■□□□□ 0.77
COL5A3P25940 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL5A3P25940 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL5A3P25940 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL5A3P25940 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.84■□□□□ 0.77
COL5A3P25940 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL5A3P25940 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL5A3P25940 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL5A3P25940 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL5A3P25940 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL5A3P25940 PGGT1BP2-201ENST00000398621 1028 ntBASIC19.84■□□□□ 0.77
COL5A3P25940 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL5A3P25940 AC079178.1-201ENST00000420915 656 ntBASIC19.84■□□□□ 0.77
COL5A3P25940 ADM-202ENST00000524948 584 ntTSL 2 BASIC19.84■□□□□ 0.77
COL5A3P25940 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC19.84■□□□□ 0.77
COL5A3P25940 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC19.84■□□□□ 0.77
COL5A3P25940 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC19.84■□□□□ 0.77
COL5A3P25940 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC19.84■□□□□ 0.77
COL5A3P25940 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
COL5A3P25940 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC19.84■□□□□ 0.77
COL5A3P25940 AL023775.1-201ENST00000454907 1746 ntBASIC19.84■□□□□ 0.77
COL5A3P25940 AC148477.4-201ENST00000613430 1793 ntBASIC19.84■□□□□ 0.77
COL5A3P25940 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC19.83■□□□□ 0.77
COL5A3P25940 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL5A3P25940 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL5A3P25940 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
COL5A3P25940 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL5A3P25940 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL5A3P25940 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL5A3P25940 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL5A3P25940 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL5A3P25940 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL5A3P25940 KLF2P2-201ENST00000416807 1039 ntBASIC19.83■□□□□ 0.77
COL5A3P25940 DEF8-202ENST00000418391 852 ntTSL 2 BASIC19.83■□□□□ 0.77
COL5A3P25940 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC19.83■□□□□ 0.77
COL5A3P25940 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC19.83■□□□□ 0.77
COL5A3P25940 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.77
COL5A3P25940 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.77
COL5A3P25940 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC19.83■□□□□ 0.77
COL5A3P25940 COG4-212ENST00000564653 590 ntTSL 5 BASIC19.83■□□□□ 0.77
COL5A3P25940 AC097724.1-201ENST00000609581 426 ntBASIC19.83■□□□□ 0.77
COL5A3P25940 AC015967.2-201ENST00000624092 234 ntBASIC19.83■□□□□ 0.77
COL5A3P25940 AC006435.4-201ENST00000625037 234 ntBASIC19.83■□□□□ 0.77
COL5A3P25940 AL356737.1-201ENST00000634391 234 ntBASIC19.83■□□□□ 0.77
COL5A3P25940 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
COL5A3P25940 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
COL5A3P25940 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL5A3P25940 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL5A3P25940 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
COL5A3P25940 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 SDCCAG3P2-201ENST00000326105 1023 ntBASIC19.82■□□□□ 0.76
COL5A3P25940 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC19.82■□□□□ 0.76
COL5A3P25940 SUN1-204ENST00000403868 978 ntTSL 2 BASIC19.82■□□□□ 0.76
COL5A3P25940 TISP43-201ENST00000409793 538 ntTSL 4 BASIC19.82■□□□□ 0.76
COL5A3P25940 FXNP2-201ENST00000411625 547 ntBASIC19.82■□□□□ 0.76
COL5A3P25940 KRTAP10-13P-201ENST00000412914 571 ntBASIC19.82■□□□□ 0.76
COL5A3P25940 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC19.82■□□□□ 0.76
COL5A3P25940 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC19.82■□□□□ 0.76
COL5A3P25940 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 TSACC-208ENST00000481479 741 ntTSL 2 BASIC19.82■□□□□ 0.76
COL5A3P25940 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC19.82■□□□□ 0.76
COL5A3P25940 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC19.82■□□□□ 0.76
COL5A3P25940 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC19.82■□□□□ 0.76
COL5A3P25940 AC020914.3-201ENST00000594712 304 ntBASIC19.82■□□□□ 0.76
COL5A3P25940 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
COL5A3P25940 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC19.82■□□□□ 0.76
COL5A3P25940 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC19.82■□□□□ 0.76
COL5A3P25940 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC19.82■□□□□ 0.76
COL5A3P25940 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 EIF4HP1-201ENST00000453115 687 ntBASIC19.82■□□□□ 0.76
COL5A3P25940 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC19.82■□□□□ 0.76
COL5A3P25940 AKR7A2P1-201ENST00000460134 915 ntBASIC19.82■□□□□ 0.76
COL5A3P25940 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC19.82■□□□□ 0.76
COL5A3P25940 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC19.82■□□□□ 0.76
COL5A3P25940 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC19.82■□□□□ 0.76
COL5A3P25940 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms