Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
SEMA3DO95025 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
SEMA3DO95025 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.52■□□□□ 0.07
SEMA3DO95025 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.52■□□□□ 0.07
SEMA3DO95025 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SEMA3DO95025 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SEMA3DO95025 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SEMA3DO95025 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
SEMA3DO95025 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SEMA3DO95025 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SEMA3DO95025 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.51■□□□□ 0.07
SEMA3DO95025 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
SEMA3DO95025 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.51■□□□□ 0.07
SEMA3DO95025 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.51■□□□□ 0.07
SEMA3DO95025 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
SEMA3DO95025 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
SEMA3DO95025 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
SEMA3DO95025 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.51■□□□□ 0.07
SEMA3DO95025 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.51■□□□□ 0.07
SEMA3DO95025 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.51■□□□□ 0.07
SEMA3DO95025 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.51■□□□□ 0.07
SEMA3DO95025 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.51■□□□□ 0.07
SEMA3DO95025 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.51■□□□□ 0.07
SEMA3DO95025 AL138918.1-201ENST00000568306 659 ntBASIC15.51■□□□□ 0.07
SEMA3DO95025 AC027307.2-201ENST00000591252 911 ntBASIC15.51■□□□□ 0.07
SEMA3DO95025 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.51■□□□□ 0.07
SEMA3DO95025 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.51■□□□□ 0.07
SEMA3DO95025 AC026120.1-201ENST00000611536 926 ntBASIC15.51■□□□□ 0.07
SEMA3DO95025 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.51■□□□□ 0.07
SEMA3DO95025 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
SEMA3DO95025 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.51■□□□□ 0.07
SEMA3DO95025 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
SEMA3DO95025 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SEMA3DO95025 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.51■□□□□ 0.07
SEMA3DO95025 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
SEMA3DO95025 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.5■□□□□ 0.07
SEMA3DO95025 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.5■□□□□ 0.07
SEMA3DO95025 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
SEMA3DO95025 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.5■□□□□ 0.07
SEMA3DO95025 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.5■□□□□ 0.07
SEMA3DO95025 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
SEMA3DO95025 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
SEMA3DO95025 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
SEMA3DO95025 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
SEMA3DO95025 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
SEMA3DO95025 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.5■□□□□ 0.07
SEMA3DO95025 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.5■□□□□ 0.07
SEMA3DO95025 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.5■□□□□ 0.07
SEMA3DO95025 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.5■□□□□ 0.07
SEMA3DO95025 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.5■□□□□ 0.07
SEMA3DO95025 AC142381.1-201ENST00000426099 345 ntBASIC15.5■□□□□ 0.07
SEMA3DO95025 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.5■□□□□ 0.07
SEMA3DO95025 DNAJB3-201ENST00000446806 729 ntBASIC15.5■□□□□ 0.07
SEMA3DO95025 SPDYE11-202ENST00000450699 704 ntBASIC15.5■□□□□ 0.07
SEMA3DO95025 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
SEMA3DO95025 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.5■□□□□ 0.07
SEMA3DO95025 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.5■□□□□ 0.07
SEMA3DO95025 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.5■□□□□ 0.07
SEMA3DO95025 KRT8P23-201ENST00000560090 1207 ntBASIC15.5■□□□□ 0.07
SEMA3DO95025 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.5■□□□□ 0.07
SEMA3DO95025 SPDYE9P-201ENST00000570642 692 ntBASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms