Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
HMGA1P17096 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
HMGA1P17096 OR6D1P-202ENST00000641007 5290 ntBASIC16.61■□□□□ 0.25
HMGA1P17096 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
HMGA1P17096 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGA1P17096 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGA1P17096 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.61■□□□□ 0.25
HMGA1P17096 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGA1P17096 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGA1P17096 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
HMGA1P17096 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
HMGA1P17096 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
HMGA1P17096 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGA1P17096 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGA1P17096 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGA1P17096 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGA1P17096 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGA1P17096 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.6■□□□□ 0.25
HMGA1P17096 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGA1P17096 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.6■□□□□ 0.25
HMGA1P17096 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGA1P17096 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGA1P17096 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
HMGA1P17096 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
HMGA1P17096 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGA1P17096 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGA1P17096 MXI1-205ENST00000393134 889 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGA1P17096 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.6■□□□□ 0.25
HMGA1P17096 ARSEP1-201ENST00000420443 635 ntBASIC16.6■□□□□ 0.25
HMGA1P17096 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC16.6■□□□□ 0.25
HMGA1P17096 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGA1P17096 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.6■□□□□ 0.25
HMGA1P17096 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGA1P17096 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.6■□□□□ 0.25
HMGA1P17096 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGA1P17096 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGA1P17096 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGA1P17096 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.6■□□□□ 0.25
HMGA1P17096 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGA1P17096 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGA1P17096 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGA1P17096 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGA1P17096 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGA1P17096 AC018892.3-201ENST00000623986 2499 ntBASIC16.59■□□□□ 0.25
HMGA1P17096 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGA1P17096 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGA1P17096 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
HMGA1P17096 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
HMGA1P17096 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGA1P17096 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGA1P17096 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGA1P17096 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGA1P17096 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGA1P17096 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
HMGA1P17096 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
HMGA1P17096 AC079776.1-201ENST00000401540 1152 ntBASIC16.59■□□□□ 0.25
HMGA1P17096 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGA1P17096 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGA1P17096 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC16.59■□□□□ 0.25
HMGA1P17096 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.59■□□□□ 0.25
HMGA1P17096 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC16.59■□□□□ 0.25
HMGA1P17096 AC104596.2-201ENST00000512793 793 ntBASIC16.59■□□□□ 0.25
HMGA1P17096 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGA1P17096 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.59■□□□□ 0.25
HMGA1P17096 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGA1P17096 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGA1P17096 AC036164.1-201ENST00000570544 333 ntBASIC16.59■□□□□ 0.25
HMGA1P17096 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC16.59■□□□□ 0.25
HMGA1P17096 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
HMGA1P17096 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
HMGA1P17096 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.59■□□□□ 0.25
HMGA1P17096 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC16.59■□□□□ 0.25
HMGA1P17096 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGA1P17096 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGA1P17096 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGA1P17096 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGA1P17096 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGA1P17096 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGA1P17096 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.59■□□□□ 0.25
HMGA1P17096 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
HMGA1P17096 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
HMGA1P17096 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGA1P17096 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGA1P17096 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC16.59■□□□□ 0.25
HMGA1P17096 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGA1P17096 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.59■□□□□ 0.25
HMGA1P17096 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.59■□□□□ 0.25
HMGA1P17096 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.59■□□□□ 0.25
HMGA1P17096 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGA1P17096 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGA1P17096 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGA1P17096 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGA1P17096 AL662844.4-201ENST00000606367 2838 ntBASIC16.58■□□□□ 0.25
HMGA1P17096 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGA1P17096 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGA1P17096 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HMGA1P17096 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGA1P17096 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.58■□□□□ 0.24
HMGA1P17096 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.58■□□□□ 0.24
HMGA1P17096 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms