Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX3O95343 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX3O95343 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX3O95343 BEX3-201ENST00000361298 921 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX3O95343 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
SIX3O95343 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX3O95343 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX3O95343 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX3O95343 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.82■□□□□ 0.12
SIX3O95343 AC074386.1-202ENST00000463561 864 ntBASIC15.82■□□□□ 0.12
SIX3O95343 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX3O95343 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX3O95343 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX3O95343 AP002472.1-201ENST00000577490 586 ntBASIC15.82■□□□□ 0.12
SIX3O95343 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.82■□□□□ 0.12
SIX3O95343 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.82■□□□□ 0.12
SIX3O95343 AL365330.1-201ENST00000607459 531 ntBASIC15.82■□□□□ 0.12
SIX3O95343 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX3O95343 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX3O95343 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX3O95343 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX3O95343 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX3O95343 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
SIX3O95343 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
SIX3O95343 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.82■□□□□ 0.12
SIX3O95343 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SIX3O95343 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX3O95343 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.82■□□□□ 0.12
SIX3O95343 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SIX3O95343 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX3O95343 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX3O95343 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX3O95343 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX3O95343 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX3O95343 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SIX3O95343 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX3O95343 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX3O95343 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX3O95343 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SIX3O95343 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.82■□□□□ 0.12
SIX3O95343 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SIX3O95343 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
SIX3O95343 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SIX3O95343 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SIX3O95343 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SIX3O95343 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
SIX3O95343 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SIX3O95343 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SIX3O95343 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.81■□□□□ 0.12
SIX3O95343 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SIX3O95343 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.81■□□□□ 0.12
SIX3O95343 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SIX3O95343 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SIX3O95343 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
SIX3O95343 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.81■□□□□ 0.12
SIX3O95343 AL590627.1-203ENST00000421194 1026 ntBASIC15.81■□□□□ 0.12
SIX3O95343 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.81■□□□□ 0.12
SIX3O95343 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
SIX3O95343 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.81■□□□□ 0.12
SIX3O95343 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SIX3O95343 PMS2P7-201ENST00000506558 1336 ntBASIC15.81■□□□□ 0.12
SIX3O95343 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.81■□□□□ 0.12
SIX3O95343 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.81■□□□□ 0.12
SIX3O95343 AL138918.1-201ENST00000568306 659 ntBASIC15.81■□□□□ 0.12
SIX3O95343 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC15.81■□□□□ 0.12
SIX3O95343 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.81■□□□□ 0.12
SIX3O95343 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
SIX3O95343 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC15.81■□□□□ 0.12
SIX3O95343 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.81■□□□□ 0.12
SIX3O95343 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SIX3O95343 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SIX3O95343 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SIX3O95343 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SIX3O95343 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.81■□□□□ 0.12
SIX3O95343 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.81■□□□□ 0.12
SIX3O95343 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX3O95343 AC136621.1-201ENST00000624017 2304 ntBASIC15.8■□□□□ 0.12
SIX3O95343 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.8■□□□□ 0.12
SIX3O95343 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.8■□□□□ 0.12
SIX3O95343 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.8■□□□□ 0.12
SIX3O95343 AC134407.2-201ENST00000625089 1978 ntBASIC15.8■□□□□ 0.12
SIX3O95343 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.8■□□□□ 0.12
SIX3O95343 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SIX3O95343 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
SIX3O95343 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX3O95343 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX3O95343 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.8■□□□□ 0.12
SIX3O95343 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SIX3O95343 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.8■□□□□ 0.12
SIX3O95343 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
SIX3O95343 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
SIX3O95343 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SIX3O95343 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX3O95343 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
SIX3O95343 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
SIX3O95343 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX3O95343 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SIX3O95343 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
SIX3O95343 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX3O95343 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms