Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-1P43699 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-1P43699 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-1P43699 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
NKX2-1P43699 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-1P43699 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-1P43699 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-1P43699 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC13.35□□□□□ -0.27
NKX2-1P43699 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC13.35□□□□□ -0.27
NKX2-1P43699 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
NKX2-1P43699 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 AL592424.1-201ENST00000563624 1536 ntBASIC13.35□□□□□ -0.27
NKX2-1P43699 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC13.35□□□□□ -0.27
NKX2-1P43699 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 TLE1-202ENST00000376484 666 ntTSL 3 BASIC13.35□□□□□ -0.27
NKX2-1P43699 RCN1P2-201ENST00000398357 915 ntBASIC13.35□□□□□ -0.27
NKX2-1P43699 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC13.35□□□□□ -0.27
NKX2-1P43699 FAM210CP-201ENST00000445714 574 ntBASIC13.35□□□□□ -0.27
NKX2-1P43699 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC13.35□□□□□ -0.27
NKX2-1P43699 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC13.35□□□□□ -0.27
NKX2-1P43699 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC13.35□□□□□ -0.27
NKX2-1P43699 AL049597.2-201ENST00000565575 961 ntBASIC13.35□□□□□ -0.27
NKX2-1P43699 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC13.35□□□□□ -0.27
NKX2-1P43699 NTF6B-201ENST00000591913 560 ntBASIC13.35□□□□□ -0.27
NKX2-1P43699 CYP2A7P1-201ENST00000595391 815 ntBASIC13.35□□□□□ -0.27
NKX2-1P43699 Z69720.1-201ENST00000601483 472 ntBASIC13.35□□□□□ -0.27
NKX2-1P43699 NDUFV2-AS1-203ENST00000608008 779 ntBASIC13.35□□□□□ -0.27
NKX2-1P43699 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
NKX2-1P43699 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
NKX2-1P43699 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
NKX2-1P43699 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
NKX2-1P43699 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC13.35□□□□□ -0.27
NKX2-1P43699 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC13.35□□□□□ -0.27
NKX2-1P43699 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC13.35□□□□□ -0.27
NKX2-1P43699 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC13.35□□□□□ -0.27
NKX2-1P43699 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
NKX2-1P43699 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC13.35□□□□□ -0.27
NKX2-1P43699 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 GOLGA8DP-202ENST00000341390 2184 ntBASIC13.35□□□□□ -0.27
NKX2-1P43699 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
NKX2-1P43699 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
NKX2-1P43699 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 AC079776.2-201ENST00000641154 1609 ntBASIC13.35□□□□□ -0.27
NKX2-1P43699 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-1P43699 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-1P43699 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-1P43699 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC13.34□□□□□ -0.27
NKX2-1P43699 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-1P43699 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-1P43699 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-1P43699 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
NKX2-1P43699 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-1P43699 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC13.34□□□□□ -0.27
NKX2-1P43699 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-1P43699 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC13.34□□□□□ -0.27
NKX2-1P43699 AC087481.3-201ENST00000602886 1894 ntBASIC13.34□□□□□ -0.27
NKX2-1P43699 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
NKX2-1P43699 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-1P43699 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
NKX2-1P43699 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
NKX2-1P43699 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC13.34□□□□□ -0.27
NKX2-1P43699 PGR-210ENST00000619228 3038 ntTSL 5 BASIC13.34□□□□□ -0.27
NKX2-1P43699 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC13.34□□□□□ -0.27
NKX2-1P43699 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-1P43699 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
NKX2-1P43699 CHCHD2P8-201ENST00000429873 447 ntBASIC13.34□□□□□ -0.27
NKX2-1P43699 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-1P43699 MDH2-205ENST00000461263 648 ntTSL 2 BASIC13.34□□□□□ -0.27
NKX2-1P43699 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
NKX2-1P43699 AL136038.3-201ENST00000561909 1096 ntBASIC13.34□□□□□ -0.27
NKX2-1P43699 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC13.34□□□□□ -0.27
NKX2-1P43699 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC13.34□□□□□ -0.27
NKX2-1P43699 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-1P43699 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-1P43699 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-1P43699 TPO-203ENST00000346956 2923 ntTSL 5 BASIC13.34□□□□□ -0.27
NKX2-1P43699 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms