Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.32□□□□□ -0.12
LMX1BO60663 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
LMX1BO60663 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
LMX1BO60663 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 AC112504.1-201ENST00000623415 1841 ntBASIC14.31□□□□□ -0.12
LMX1BO60663 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LMX1BO60663 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
LMX1BO60663 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC14.31□□□□□ -0.12
LMX1BO60663 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LMX1BO60663 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LMX1BO60663 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LMX1BO60663 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
LMX1BO60663 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
LMX1BO60663 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.31□□□□□ -0.12
LMX1BO60663 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC14.31□□□□□ -0.12
LMX1BO60663 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.31□□□□□ -0.12
LMX1BO60663 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LMX1BO60663 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
LMX1BO60663 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LMX1BO60663 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LMX1BO60663 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LMX1BO60663 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LMX1BO60663 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC14.31□□□□□ -0.12
LMX1BO60663 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
LMX1BO60663 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
LMX1BO60663 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
LMX1BO60663 IGLL3P-201ENST00000412472 434 ntBASIC14.31□□□□□ -0.12
LMX1BO60663 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC14.31□□□□□ -0.12
LMX1BO60663 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC14.31□□□□□ -0.12
LMX1BO60663 AC074386.1-202ENST00000463561 864 ntBASIC14.31□□□□□ -0.12
LMX1BO60663 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LMX1BO60663 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
LMX1BO60663 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC14.31□□□□□ -0.12
LMX1BO60663 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC14.31□□□□□ -0.12
LMX1BO60663 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
LMX1BO60663 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC14.31□□□□□ -0.12
LMX1BO60663 KRT19P2-202ENST00000557173 1012 ntBASIC14.31□□□□□ -0.12
LMX1BO60663 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
LMX1BO60663 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
LMX1BO60663 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC14.31□□□□□ -0.12
LMX1BO60663 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC14.31□□□□□ -0.12
LMX1BO60663 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC14.31□□□□□ -0.12
LMX1BO60663 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC14.31□□□□□ -0.12
LMX1BO60663 METTL23-205ENST00000588302 925 ntTSL 5 BASIC14.31□□□□□ -0.12
LMX1BO60663 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
LMX1BO60663 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC14.31□□□□□ -0.12
LMX1BO60663 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
LMX1BO60663 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LMX1BO60663 AQP6-205ENST00000618286 829 ntTSL 5 BASIC14.31□□□□□ -0.12
LMX1BO60663 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC14.31□□□□□ -0.12
LMX1BO60663 AC010507.1-201ENST00000633895 436 ntBASIC14.31□□□□□ -0.12
LMX1BO60663 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LMX1BO60663 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC14.31□□□□□ -0.12
LMX1BO60663 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC14.31□□□□□ -0.12
LMX1BO60663 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
LMX1BO60663 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LMX1BO60663 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
LMX1BO60663 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LMX1BO60663 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LMX1BO60663 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
LMX1BO60663 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC14.31□□□□□ -0.12
LMX1BO60663 AC092384.3-202ENST00000564646 2873 ntBASIC14.31□□□□□ -0.12
LMX1BO60663 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LMX1BO60663 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC14.31□□□□□ -0.12
LMX1BO60663 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
LMX1BO60663 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC14.3□□□□□ -0.12
LMX1BO60663 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.3□□□□□ -0.12
LMX1BO60663 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LMX1BO60663 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LMX1BO60663 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
LMX1BO60663 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC14.3□□□□□ -0.12
LMX1BO60663 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC14.3□□□□□ -0.12
LMX1BO60663 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.3□□□□□ -0.12
LMX1BO60663 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LMX1BO60663 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC14.3□□□□□ -0.12
LMX1BO60663 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
LMX1BO60663 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
LMX1BO60663 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LMX1BO60663 HCG4-201ENST00000418983 998 ntBASIC14.3□□□□□ -0.12
LMX1BO60663 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
LMX1BO60663 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC14.3□□□□□ -0.12
LMX1BO60663 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
LMX1BO60663 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC14.3□□□□□ -0.12
LMX1BO60663 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
LMX1BO60663 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC14.3□□□□□ -0.12
LMX1BO60663 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC14.3□□□□□ -0.12
LMX1BO60663 AC027612.4-201ENST00000605371 583 ntBASIC14.3□□□□□ -0.12
LMX1BO60663 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC14.3□□□□□ -0.12
LMX1BO60663 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
LMX1BO60663 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC14.3□□□□□ -0.12
LMX1BO60663 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LMX1BO60663 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
LMX1BO60663 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms