Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 LRRFIP1P1-201ENST00000498774 2246 ntBASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 UBL5-208ENST00000593087 320 ntTSL 3 BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 AC093813.1-201ENST00000605066 256 ntBASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 AC106872.11-201ENST00000605838 421 ntBASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 AL008638.5-201ENST00000623814 1298 ntBASIC20.56■□□□□ 0.88
SHANK3Q9BYB0 AC018470.1-201ENST00000624790 3129 ntBASIC20.55■□□□□ 0.88
SHANK3Q9BYB0 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SHANK3Q9BYB0 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHANK3Q9BYB0 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SHANK3Q9BYB0 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
SHANK3Q9BYB0 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SHANK3Q9BYB0 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC20.55■□□□□ 0.88
SHANK3Q9BYB0 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SHANK3Q9BYB0 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SHANK3Q9BYB0 ME2P1-201ENST00000426028 1970 ntBASIC20.55■□□□□ 0.88
SHANK3Q9BYB0 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHANK3Q9BYB0 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SHANK3Q9BYB0 AC091804.1-201ENST00000486888 567 ntBASIC20.55■□□□□ 0.88
SHANK3Q9BYB0 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SHANK3Q9BYB0 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
SHANK3Q9BYB0 AC009486.1-201ENST00000569860 813 ntBASIC20.55■□□□□ 0.88
SHANK3Q9BYB0 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHANK3Q9BYB0 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SHANK3Q9BYB0 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SHANK3Q9BYB0 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHANK3Q9BYB0 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHANK3Q9BYB0 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHANK3Q9BYB0 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHANK3Q9BYB0 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHANK3Q9BYB0 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SHANK3Q9BYB0 GAPDHP40-201ENST00000505218 1006 ntBASIC20.54■□□□□ 0.88
SHANK3Q9BYB0 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SHANK3Q9BYB0 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC20.54■□□□□ 0.88
SHANK3Q9BYB0 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC20.54■□□□□ 0.88
SHANK3Q9BYB0 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SHANK3Q9BYB0 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC20.54■□□□□ 0.88
SHANK3Q9BYB0 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
SHANK3Q9BYB0 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
SHANK3Q9BYB0 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC20.54■□□□□ 0.88
SHANK3Q9BYB0 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHANK3Q9BYB0 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHANK3Q9BYB0 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHANK3Q9BYB0 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SHANK3Q9BYB0 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC20.54■□□□□ 0.88
SHANK3Q9BYB0 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHANK3Q9BYB0 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
SHANK3Q9BYB0 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 AHRR-211ENST00000515206 462 ntTSL 5 BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 AP001582.1-201ENST00000525856 295 ntBASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms