Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.19■□□□□ 0.02
RFX4Q33E94 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.19■□□□□ 0.02
RFX4Q33E94 OR2I1P-209ENST00000641730 5365 ntBASIC15.19■□□□□ 0.02
RFX4Q33E94 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.19■□□□□ 0.02
RFX4Q33E94 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX4Q33E94 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
RFX4Q33E94 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFX4Q33E94 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.18■□□□□ 0.02
RFX4Q33E94 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.18■□□□□ 0.02
RFX4Q33E94 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.18■□□□□ 0.02
RFX4Q33E94 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFX4Q33E94 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.18■□□□□ 0.02
RFX4Q33E94 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFX4Q33E94 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFX4Q33E94 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFX4Q33E94 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
RFX4Q33E94 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFX4Q33E94 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFX4Q33E94 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFX4Q33E94 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
RFX4Q33E94 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFX4Q33E94 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFX4Q33E94 ARMC10P1-201ENST00000313754 855 ntBASIC15.18■□□□□ 0.02
RFX4Q33E94 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFX4Q33E94 EMD-201ENST00000369835 966 ntTSL 3 BASIC15.18■□□□□ 0.02
RFX4Q33E94 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC15.18■□□□□ 0.02
RFX4Q33E94 RBM17P3-201ENST00000417687 1192 ntBASIC15.18■□□□□ 0.02
RFX4Q33E94 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFX4Q33E94 PAWRP1-201ENST00000451083 565 ntBASIC15.18■□□□□ 0.02
RFX4Q33E94 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC15.18■□□□□ 0.02
RFX4Q33E94 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC15.18■□□□□ 0.02
RFX4Q33E94 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC15.18■□□□□ 0.02
RFX4Q33E94 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC15.18■□□□□ 0.02
RFX4Q33E94 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC15.18■□□□□ 0.02
RFX4Q33E94 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
RFX4Q33E94 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC15.18■□□□□ 0.02
RFX4Q33E94 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.18■□□□□ 0.02
RFX4Q33E94 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFX4Q33E94 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFX4Q33E94 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFX4Q33E94 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.18■□□□□ 0.02
RFX4Q33E94 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFX4Q33E94 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
RFX4Q33E94 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
RFX4Q33E94 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.18■□□□□ 0.02
RFX4Q33E94 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFX4Q33E94 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFX4Q33E94 AL592424.1-201ENST00000563624 1536 ntBASIC15.17■□□□□ 0.02
RFX4Q33E94 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.17■□□□□ 0.02
RFX4Q33E94 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
RFX4Q33E94 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFX4Q33E94 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.17■□□□□ 0.02
RFX4Q33E94 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX4Q33E94 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.17■□□□□ 0.02
RFX4Q33E94 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
RFX4Q33E94 AC136621.1-201ENST00000624017 2304 ntBASIC15.17■□□□□ 0.02
RFX4Q33E94 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.17■□□□□ 0.02
RFX4Q33E94 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFX4Q33E94 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX4Q33E94 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX4Q33E94 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX4Q33E94 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
RFX4Q33E94 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.17■□□□□ 0.02
RFX4Q33E94 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.17■□□□□ 0.02
RFX4Q33E94 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX4Q33E94 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
RFX4Q33E94 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFX4Q33E94 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX4Q33E94 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX4Q33E94 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC15.17■□□□□ 0.02
RFX4Q33E94 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC15.17■□□□□ 0.02
RFX4Q33E94 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
RFX4Q33E94 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.17■□□□□ 0.02
RFX4Q33E94 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC15.17■□□□□ 0.02
RFX4Q33E94 AL445228.2-201ENST00000605589 952 ntBASIC15.17■□□□□ 0.02
RFX4Q33E94 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
RFX4Q33E94 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC15.17■□□□□ 0.02
RFX4Q33E94 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC15.17■□□□□ 0.02
RFX4Q33E94 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC15.17■□□□□ 0.02
RFX4Q33E94 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX4Q33E94 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX4Q33E94 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
RFX4Q33E94 AL009178.2-201ENST00000597278 2719 ntBASIC15.17■□□□□ 0.02
RFX4Q33E94 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFX4Q33E94 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX4Q33E94 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.17■□□□□ 0.02
RFX4Q33E94 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.17■□□□□ 0.02
RFX4Q33E94 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFX4Q33E94 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX4Q33E94 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX4Q33E94 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX4Q33E94 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.17■□□□□ 0.02
RFX4Q33E94 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX4Q33E94 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX4Q33E94 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFX4Q33E94 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.16■□□□□ 0.02
RFX4Q33E94 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms