Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTCFP49711 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTCFP49711 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CTCFP49711 PFN2-215ENST00000497148 743 ntTSL 4 BASIC18.71■□□□□ 0.59
CTCFP49711 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC18.71■□□□□ 0.59
CTCFP49711 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC18.71■□□□□ 0.59
CTCFP49711 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC18.71■□□□□ 0.59
CTCFP49711 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
CTCFP49711 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC18.71■□□□□ 0.59
CTCFP49711 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC18.71■□□□□ 0.59
CTCFP49711 KLK3-207ENST00000595952 969 ntTSL 3 BASIC18.71■□□□□ 0.59
CTCFP49711 NDUFV2P1-201ENST00000596415 907 ntBASIC18.71■□□□□ 0.59
CTCFP49711 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC18.71■□□□□ 0.59
CTCFP49711 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC18.71■□□□□ 0.59
CTCFP49711 RPL35-206ENST00000629845 340 ntTSL 5 BASIC18.71■□□□□ 0.59
CTCFP49711 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.71■□□□□ 0.59
CTCFP49711 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CTCFP49711 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CTCFP49711 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CTCFP49711 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CTCFP49711 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
CTCFP49711 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CTCFP49711 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC18.71■□□□□ 0.59
CTCFP49711 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CTCFP49711 AC011270.2-201ENST00000624293 2550 ntBASIC18.71■□□□□ 0.59
CTCFP49711 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTCFP49711 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTCFP49711 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CTCFP49711 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.71■□□□□ 0.59
CTCFP49711 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CTCFP49711 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC18.71■□□□□ 0.59
CTCFP49711 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CTCFP49711 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTCFP49711 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTCFP49711 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTCFP49711 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTCFP49711 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTCFP49711 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTCFP49711 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTCFP49711 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTCFP49711 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTCFP49711 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTCFP49711 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC18.7■□□□□ 0.58
CTCFP49711 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
CTCFP49711 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.7■□□□□ 0.58
CTCFP49711 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTCFP49711 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
CTCFP49711 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
CTCFP49711 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
CTCFP49711 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTCFP49711 BAATP1-201ENST00000412284 1225 ntBASIC18.7■□□□□ 0.58
CTCFP49711 KRTAP19-9P-201ENST00000421795 191 ntBASIC18.7■□□□□ 0.58
CTCFP49711 AL133466.1-201ENST00000447582 150 ntBASIC18.7■□□□□ 0.58
CTCFP49711 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC18.7■□□□□ 0.58
CTCFP49711 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTCFP49711 AC104784.1-201ENST00000473096 294 ntBASIC18.7■□□□□ 0.58
CTCFP49711 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTCFP49711 RPL8-205ENST00000527914 551 ntTSL 3 BASIC18.7■□□□□ 0.58
CTCFP49711 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC18.7■□□□□ 0.58
CTCFP49711 AC009486.1-201ENST00000569860 813 ntBASIC18.7■□□□□ 0.58
CTCFP49711 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC18.7■□□□□ 0.58
CTCFP49711 AC024267.1-201ENST00000582320 895 ntBASIC18.7■□□□□ 0.58
CTCFP49711 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTCFP49711 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CTCFP49711 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
CTCFP49711 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
CTCFP49711 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CTCFP49711 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTCFP49711 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTCFP49711 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.7■□□□□ 0.58
CTCFP49711 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTCFP49711 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTCFP49711 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.7■□□□□ 0.58
CTCFP49711 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CTCFP49711 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTCFP49711 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTCFP49711 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.69■□□□□ 0.58
CTCFP49711 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CTCFP49711 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTCFP49711 AC124067.4-201ENST00000519691 2379 ntBASIC18.69■□□□□ 0.58
CTCFP49711 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CTCFP49711 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CTCFP49711 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CTCFP49711 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTCFP49711 HNRNPA1P32-201ENST00000396326 963 ntBASIC18.69■□□□□ 0.58
CTCFP49711 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC18.69■□□□□ 0.58
CTCFP49711 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTCFP49711 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC18.69■□□□□ 0.58
CTCFP49711 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC18.69■□□□□ 0.58
CTCFP49711 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.69■□□□□ 0.58
CTCFP49711 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC18.69■□□□□ 0.58
CTCFP49711 FHL2-212ENST00000607522 759 ntTSL 2 BASIC18.69■□□□□ 0.58
CTCFP49711 AC148477.9-201ENST00000623974 539 ntBASIC18.69■□□□□ 0.58
CTCFP49711 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.69■□□□□ 0.58
CTCFP49711 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTCFP49711 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CTCFP49711 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC18.69■□□□□ 0.58
CTCFP49711 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTCFP49711 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CTCFP49711 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms