Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CPNE4Q96A23 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC14.64□□□□□ -0.07
CPNE4Q96A23 GATD1-206ENST00000526325 756 ntTSL 5 BASIC14.64□□□□□ -0.07
CPNE4Q96A23 AL512356.2-201ENST00000546955 174 ntBASIC14.64□□□□□ -0.07
CPNE4Q96A23 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CPNE4Q96A23 LSM12-202ENST00000585388 942 ntTSL 3 BASIC14.64□□□□□ -0.07
CPNE4Q96A23 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CPNE4Q96A23 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC14.64□□□□□ -0.07
CPNE4Q96A23 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC14.64□□□□□ -0.07
CPNE4Q96A23 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CPNE4Q96A23 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CPNE4Q96A23 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC14.64□□□□□ -0.07
CPNE4Q96A23 AL136379.1-201ENST00000623471 2642 ntBASIC14.64□□□□□ -0.07
CPNE4Q96A23 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC14.64□□□□□ -0.07
CPNE4Q96A23 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
CPNE4Q96A23 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC14.64□□□□□ -0.07
CPNE4Q96A23 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC14.64□□□□□ -0.07
CPNE4Q96A23 GOLGA2P9-201ENST00000596977 1937 ntBASIC14.64□□□□□ -0.07
CPNE4Q96A23 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC14.64□□□□□ -0.07
CPNE4Q96A23 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CPNE4Q96A23 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC14.64□□□□□ -0.07
CPNE4Q96A23 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
CPNE4Q96A23 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CPNE4Q96A23 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CPNE4Q96A23 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
CPNE4Q96A23 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CPNE4Q96A23 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC14.63□□□□□ -0.07
CPNE4Q96A23 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CPNE4Q96A23 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
CPNE4Q96A23 FOXO1B-201ENST00000504678 1527 ntBASIC14.63□□□□□ -0.07
CPNE4Q96A23 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CPNE4Q96A23 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CPNE4Q96A23 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CPNE4Q96A23 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
CPNE4Q96A23 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC14.63□□□□□ -0.07
CPNE4Q96A23 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC14.63□□□□□ -0.07
CPNE4Q96A23 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
CPNE4Q96A23 RNA5SP410-201ENST00000516285 106 ntBASIC14.63□□□□□ -0.07
CPNE4Q96A23 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CPNE4Q96A23 RARRES2P9-201ENST00000565168 469 ntBASIC14.63□□□□□ -0.07
CPNE4Q96A23 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC14.63□□□□□ -0.07
CPNE4Q96A23 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14.63□□□□□ -0.07
CPNE4Q96A23 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CPNE4Q96A23 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
CPNE4Q96A23 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC14.63□□□□□ -0.07
CPNE4Q96A23 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC14.63□□□□□ -0.07
CPNE4Q96A23 FLJ16779-201ENST00000612722 7638 ntBASIC14.63□□□□□ -0.07
CPNE4Q96A23 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC14.63□□□□□ -0.07
CPNE4Q96A23 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CPNE4Q96A23 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CPNE4Q96A23 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CPNE4Q96A23 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CPNE4Q96A23 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CPNE4Q96A23 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CPNE4Q96A23 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC14.63□□□□□ -0.07
CPNE4Q96A23 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC14.63□□□□□ -0.07
CPNE4Q96A23 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC14.63□□□□□ -0.07
CPNE4Q96A23 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CPNE4Q96A23 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC14.63□□□□□ -0.07
CPNE4Q96A23 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CPNE4Q96A23 ALOX12P2-203ENST00000570921 1945 ntBASIC14.62□□□□□ -0.07
CPNE4Q96A23 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC14.62□□□□□ -0.07
CPNE4Q96A23 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC14.62□□□□□ -0.07
CPNE4Q96A23 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
CPNE4Q96A23 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC14.62□□□□□ -0.07
CPNE4Q96A23 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CPNE4Q96A23 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CPNE4Q96A23 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CPNE4Q96A23 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC14.62□□□□□ -0.07
CPNE4Q96A23 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CPNE4Q96A23 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CPNE4Q96A23 HNRNPFP1-201ENST00000391730 1133 ntBASIC14.62□□□□□ -0.07
CPNE4Q96A23 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.62□□□□□ -0.07
CPNE4Q96A23 PMS2P2-201ENST00000425039 1128 ntBASIC14.62□□□□□ -0.07
CPNE4Q96A23 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC14.62□□□□□ -0.07
CPNE4Q96A23 SPDYE14P-201ENST00000442619 822 ntBASIC14.62□□□□□ -0.07
CPNE4Q96A23 CNN2P2-201ENST00000443536 909 ntBASIC14.62□□□□□ -0.07
CPNE4Q96A23 CNN2P3-201ENST00000450201 906 ntBASIC14.62□□□□□ -0.07
CPNE4Q96A23 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CPNE4Q96A23 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC14.62□□□□□ -0.07
CPNE4Q96A23 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
CPNE4Q96A23 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC14.62□□□□□ -0.07
CPNE4Q96A23 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC14.62□□□□□ -0.07
CPNE4Q96A23 AC026150.2-201ENST00000564693 1156 ntBASIC14.62□□□□□ -0.07
CPNE4Q96A23 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC14.62□□□□□ -0.07
CPNE4Q96A23 AP3S2-216ENST00000617003 1561 ntBASIC14.62□□□□□ -0.07
CPNE4Q96A23 AL136317.3-201ENST00000618497 906 ntBASIC14.62□□□□□ -0.07
CPNE4Q96A23 AC063926.3-201ENST00000624734 5658 ntBASIC14.62□□□□□ -0.07
CPNE4Q96A23 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.62□□□□□ -0.07
CPNE4Q96A23 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.62□□□□□ -0.07
CPNE4Q96A23 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CPNE4Q96A23 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CPNE4Q96A23 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CPNE4Q96A23 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC14.62□□□□□ -0.07
CPNE4Q96A23 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CPNE4Q96A23 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC14.62□□□□□ -0.07
CPNE4Q96A23 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CPNE4Q96A23 PCDHA14-201ENST00000506751 2298 ntBASIC14.62□□□□□ -0.07
CPNE4Q96A23 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC14.62□□□□□ -0.07
CPNE4Q96A23 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms