Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CTR9Q6PD62 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC19.29■□□□□ 0.68
CTR9Q6PD62 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTR9Q6PD62 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC19.29■□□□□ 0.68
CTR9Q6PD62 AC241585.1-201ENST00000433527 519 ntBASIC19.29■□□□□ 0.68
CTR9Q6PD62 AC004890.2-204ENST00000481968 304 ntBASIC19.29■□□□□ 0.68
CTR9Q6PD62 INGX-202ENST00000489074 768 ntBASIC19.29■□□□□ 0.68
CTR9Q6PD62 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTR9Q6PD62 AL079307.3-201ENST00000556114 283 ntBASIC19.29■□□□□ 0.68
CTR9Q6PD62 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC19.29■□□□□ 0.68
CTR9Q6PD62 NAA60-208ENST00000570819 833 ntTSL 2 BASIC19.29■□□□□ 0.68
CTR9Q6PD62 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC19.29■□□□□ 0.68
CTR9Q6PD62 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC19.29■□□□□ 0.68
CTR9Q6PD62 TEX28P1-201ENST00000613479 1221 ntBASIC19.29■□□□□ 0.68
CTR9Q6PD62 TEX28P2-201ENST00000617764 1221 ntBASIC19.29■□□□□ 0.68
CTR9Q6PD62 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
CTR9Q6PD62 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC19.29■□□□□ 0.68
CTR9Q6PD62 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CTR9Q6PD62 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
CTR9Q6PD62 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTR9Q6PD62 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CTR9Q6PD62 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTR9Q6PD62 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTR9Q6PD62 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CTR9Q6PD62 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC19.28■□□□□ 0.68
CTR9Q6PD62 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTR9Q6PD62 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CTR9Q6PD62 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CTR9Q6PD62 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTR9Q6PD62 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CTR9Q6PD62 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CTR9Q6PD62 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC19.28■□□□□ 0.68
CTR9Q6PD62 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CTR9Q6PD62 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTR9Q6PD62 CETN4P-206ENST00000642099 2168 ntBASIC19.28■□□□□ 0.68
CTR9Q6PD62 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTR9Q6PD62 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTR9Q6PD62 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
CTR9Q6PD62 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC19.28■□□□□ 0.68
CTR9Q6PD62 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CTR9Q6PD62 MPI-209ENST00000564003 1195 ntTSL 2 BASIC19.28■□□□□ 0.68
CTR9Q6PD62 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC19.28■□□□□ 0.68
CTR9Q6PD62 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC19.28■□□□□ 0.68
CTR9Q6PD62 AC092364.2-202ENST00000597012 1073 ntBASIC19.28■□□□□ 0.68
CTR9Q6PD62 AJ011932.1-201ENST00000621707 465 ntBASIC19.28■□□□□ 0.68
CTR9Q6PD62 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTR9Q6PD62 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC19.28■□□□□ 0.68
CTR9Q6PD62 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CTR9Q6PD62 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
CTR9Q6PD62 OR6D1P-203ENST00000641209 4860 ntBASIC19.28■□□□□ 0.68
CTR9Q6PD62 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CTR9Q6PD62 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC19.28■□□□□ 0.68
CTR9Q6PD62 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTR9Q6PD62 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
CTR9Q6PD62 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
CTR9Q6PD62 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC19.27■□□□□ 0.68
CTR9Q6PD62 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTR9Q6PD62 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CTR9Q6PD62 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CTR9Q6PD62 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTR9Q6PD62 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTR9Q6PD62 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CTR9Q6PD62 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CTR9Q6PD62 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC19.27■□□□□ 0.68
CTR9Q6PD62 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
CTR9Q6PD62 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTR9Q6PD62 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC19.27■□□□□ 0.68
CTR9Q6PD62 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC19.27■□□□□ 0.68
CTR9Q6PD62 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CTR9Q6PD62 AL080243.2-201ENST00000418783 582 ntBASIC19.27■□□□□ 0.68
CTR9Q6PD62 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTR9Q6PD62 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC19.27■□□□□ 0.68
CTR9Q6PD62 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC19.27■□□□□ 0.68
CTR9Q6PD62 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC19.27■□□□□ 0.68
CTR9Q6PD62 LY6E-204ENST00000519546 971 ntTSL 2 BASIC19.27■□□□□ 0.68
CTR9Q6PD62 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CTR9Q6PD62 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC19.27■□□□□ 0.68
CTR9Q6PD62 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC19.27■□□□□ 0.68
CTR9Q6PD62 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CTR9Q6PD62 CICP6-201ENST00000457191 2729 ntBASIC19.27■□□□□ 0.67
CTR9Q6PD62 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CTR9Q6PD62 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CTR9Q6PD62 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
CTR9Q6PD62 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
CTR9Q6PD62 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CTR9Q6PD62 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC19.26■□□□□ 0.67
CTR9Q6PD62 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CTR9Q6PD62 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CTR9Q6PD62 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CTR9Q6PD62 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CTR9Q6PD62 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CTR9Q6PD62 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC19.26■□□□□ 0.67
CTR9Q6PD62 MIR661-201ENST00000384842 89 ntBASIC19.26■□□□□ 0.67
CTR9Q6PD62 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CTR9Q6PD62 MRPS18AP1-201ENST00000414458 589 ntBASIC19.26■□□□□ 0.67
CTR9Q6PD62 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CTR9Q6PD62 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CTR9Q6PD62 MIR3197-201ENST00000582241 73 ntBASIC19.26■□□□□ 0.67
CTR9Q6PD62 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CTR9Q6PD62 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms