Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.35■□□□□ 0.05
LDB3O75112 AC023141.5-201ENST00000458585 616 ntBASIC15.35■□□□□ 0.05
LDB3O75112 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.35■□□□□ 0.05
LDB3O75112 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LDB3O75112 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.35■□□□□ 0.05
LDB3O75112 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.35■□□□□ 0.05
LDB3O75112 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.35■□□□□ 0.05
LDB3O75112 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.35■□□□□ 0.05
LDB3O75112 AP001160.2-201ENST00000596071 487 ntBASIC15.35■□□□□ 0.05
LDB3O75112 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC15.35■□□□□ 0.05
LDB3O75112 GPALPP1-207ENST00000611650 899 ntBASIC15.35■□□□□ 0.05
LDB3O75112 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LDB3O75112 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LDB3O75112 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LDB3O75112 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LDB3O75112 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.35■□□□□ 0.05
LDB3O75112 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.35■□□□□ 0.05
LDB3O75112 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LDB3O75112 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
LDB3O75112 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
LDB3O75112 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
LDB3O75112 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
LDB3O75112 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.35■□□□□ 0.05
LDB3O75112 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LDB3O75112 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC15.35■□□□□ 0.05
LDB3O75112 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LDB3O75112 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.35■□□□□ 0.05
LDB3O75112 DOC2GP-204ENST00000639052 2548 ntBASIC15.35■□□□□ 0.05
LDB3O75112 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LDB3O75112 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDB3O75112 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDB3O75112 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LDB3O75112 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.34■□□□□ 0.05
LDB3O75112 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDB3O75112 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
LDB3O75112 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDB3O75112 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.34■□□□□ 0.05
LDB3O75112 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDB3O75112 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDB3O75112 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDB3O75112 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LDB3O75112 CYP2T1P-202ENST00000641596 2535 ntBASIC15.34■□□□□ 0.05
LDB3O75112 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
LDB3O75112 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15.34■□□□□ 0.05
LDB3O75112 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDB3O75112 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
LDB3O75112 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.34■□□□□ 0.05
LDB3O75112 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LDB3O75112 AC098859.1-201ENST00000502915 1238 ntBASIC15.34■□□□□ 0.05
LDB3O75112 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LDB3O75112 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC15.34■□□□□ 0.05
LDB3O75112 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.34■□□□□ 0.05
LDB3O75112 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDB3O75112 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDB3O75112 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.34■□□□□ 0.05
LDB3O75112 AC084121.4-201ENST00000641598 221 ntBASIC15.34■□□□□ 0.05
LDB3O75112 AF228730.8-201ENST00000642140 221 ntBASIC15.34■□□□□ 0.05
LDB3O75112 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDB3O75112 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDB3O75112 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.34■□□□□ 0.05
LDB3O75112 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDB3O75112 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDB3O75112 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC15.34■□□□□ 0.05
LDB3O75112 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
LDB3O75112 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
LDB3O75112 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.34■□□□□ 0.05
LDB3O75112 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LDB3O75112 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDB3O75112 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.34■□□□□ 0.05
LDB3O75112 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
LDB3O75112 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.33■□□□□ 0.05
LDB3O75112 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
LDB3O75112 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.33■□□□□ 0.05
LDB3O75112 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.05
LDB3O75112 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
LDB3O75112 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
LDB3O75112 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
LDB3O75112 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
LDB3O75112 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
LDB3O75112 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
LDB3O75112 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LDB3O75112 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LDB3O75112 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC15.33■□□□□ 0.04
LDB3O75112 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
LDB3O75112 RBPMS2P1-201ENST00000437762 623 ntBASIC15.33■□□□□ 0.04
LDB3O75112 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.33■□□□□ 0.04
LDB3O75112 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.33■□□□□ 0.04
LDB3O75112 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LDB3O75112 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.33■□□□□ 0.04
LDB3O75112 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.33■□□□□ 0.04
LDB3O75112 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
LDB3O75112 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LDB3O75112 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
LDB3O75112 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.33■□□□□ 0.04
LDB3O75112 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.33■□□□□ 0.04
LDB3O75112 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
LDB3O75112 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.33■□□□□ 0.04
LDB3O75112 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
LDB3O75112 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LDB3O75112 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms