Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 AC026954.1-201ENST00000429771 1293 ntBASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 CYP4F24P-201ENST00000586049 1580 ntBASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 RERG-209ENST00000546331 1383 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 AC104306.2-201ENST00000451877 341 ntBASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 NEU3-202ENST00000526068 431 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 KRT90P-201ENST00000549264 1064 ntBASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 MIR4321-201ENST00000592276 80 ntBASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 ATF5-205ENST00000600336 682 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.64■□□□□ 0.74
CCDC88AQ3V6T2 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC88AQ3V6T2 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC19.64■□□□□ 0.74
CCDC88AQ3V6T2 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 AC016694.1-201ENST00000434179 700 ntBASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 AC012441.1-201ENST00000446669 685 ntBASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 SPIB-207ENST00000597855 564 ntTSL 4 BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC88AQ3V6T2 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 GRN-214ENST00000589265 1632 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 UBALD1-205ENST00000590891 2641 ntBASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 SOCS2P1-201ENST00000417727 557 ntBASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 ACTG1P3-201ENST00000431775 1114 ntBASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 KRT8P13-201ENST00000463294 1010 ntBASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 PRKN-211ENST00000615065 261 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 EML3-216ENST00000529309 2909 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 GCK-202ENST00000345378 2421 ntTSL 2 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms