Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
MSH6P52701 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
MSH6P52701 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
MSH6P52701 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC22.3■■□□□ 1.16
MSH6P52701 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
MSH6P52701 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH6P52701 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
MSH6P52701 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH6P52701 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH6P52701 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH6P52701 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
MSH6P52701 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
MSH6P52701 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC22.29■■□□□ 1.16
MSH6P52701 USE1-206ENST00000595101 1776 ntTSL 2 BASIC22.29■■□□□ 1.16
MSH6P52701 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC22.29■■□□□ 1.16
MSH6P52701 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
MSH6P52701 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
MSH6P52701 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
MSH6P52701 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
MSH6P52701 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
MSH6P52701 AC253536.4-201ENST00000440539 267 ntBASIC22.29■■□□□ 1.16
MSH6P52701 AC004898.1-201ENST00000451057 766 ntBASIC22.29■■□□□ 1.16
MSH6P52701 LDHBP1-201ENST00000455730 1119 ntBASIC22.29■■□□□ 1.16
MSH6P52701 AC093433.1-201ENST00000458048 571 ntBASIC22.29■■□□□ 1.16
MSH6P52701 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC22.29■■□□□ 1.16
MSH6P52701 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
MSH6P52701 MIR4321-201ENST00000592276 80 ntBASIC22.29■■□□□ 1.16
MSH6P52701 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
MSH6P52701 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
MSH6P52701 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
MSH6P52701 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
MSH6P52701 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC22.29■■□□□ 1.16
MSH6P52701 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
MSH6P52701 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
MSH6P52701 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC22.29■■□□□ 1.16
MSH6P52701 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
MSH6P52701 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSH6P52701 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
MSH6P52701 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC22.28■■□□□ 1.16
MSH6P52701 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSH6P52701 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC22.28■■□□□ 1.16
MSH6P52701 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
MSH6P52701 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
MSH6P52701 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSH6P52701 BTBD6P1-201ENST00000412176 1267 ntBASIC22.28■■□□□ 1.16
MSH6P52701 BX284668.4-201ENST00000453917 508 ntBASIC22.28■■□□□ 1.16
MSH6P52701 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
MSH6P52701 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
MSH6P52701 FADS2-212ENST00000522639 360 ntTSL 5 BASIC22.28■■□□□ 1.16
MSH6P52701 FADS2-215ENST00000574708 385 ntTSL 3 BASIC22.28■■□□□ 1.16
MSH6P52701 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC22.28■■□□□ 1.16
MSH6P52701 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSH6P52701 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSH6P52701 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSH6P52701 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSH6P52701 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
MSH6P52701 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
MSH6P52701 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSH6P52701 KRT8P37-201ENST00000451609 1420 ntBASIC22.28■■□□□ 1.16
MSH6P52701 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
MSH6P52701 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSH6P52701 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSH6P52701 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSH6P52701 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSH6P52701 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC22.27■■□□□ 1.16
MSH6P52701 AC074338.1-201ENST00000416825 156 ntBASIC22.27■■□□□ 1.16
MSH6P52701 EEF1DP4-201ENST00000446006 880 ntBASIC22.27■■□□□ 1.16
MSH6P52701 VDAC1P7-201ENST00000462417 847 ntBASIC22.27■■□□□ 1.16
MSH6P52701 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC22.27■■□□□ 1.16
MSH6P52701 AHRR-211ENST00000515206 462 ntTSL 5 BASIC22.27■■□□□ 1.16
MSH6P52701 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC22.27■■□□□ 1.16
MSH6P52701 AP006547.1-201ENST00000563435 692 ntBASIC22.27■■□□□ 1.16
MSH6P52701 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC22.27■■□□□ 1.16
MSH6P52701 AC020914.3-201ENST00000594712 304 ntBASIC22.27■■□□□ 1.16
MSH6P52701 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSH6P52701 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSH6P52701 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSH6P52701 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC22.27■■□□□ 1.16
MSH6P52701 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
MSH6P52701 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSH6P52701 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC22.27■■□□□ 1.16
MSH6P52701 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
MSH6P52701 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC22.27■■□□□ 1.16
MSH6P52701 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC22.27■■□□□ 1.16
MSH6P52701 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSH6P52701 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC22.27■■□□□ 1.16
MSH6P52701 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
MSH6P52701 KRT8P19-201ENST00000551916 1455 ntBASIC22.27■■□□□ 1.16
MSH6P52701 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
MSH6P52701 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
MSH6P52701 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC22.27■■□□□ 1.15
MSH6P52701 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
MSH6P52701 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.15
MSH6P52701 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH6P52701 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH6P52701 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
MSH6P52701 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
MSH6P52701 AZGP1P1-201ENST00000411909 902 ntBASIC22.26■■□□□ 1.15
MSH6P52701 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC22.26■■□□□ 1.15
MSH6P52701 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms