Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.69■□□□□ 0.58
ATL3Q6DD88 AC009947.1-201ENST00000444350 727 ntBASIC18.69■□□□□ 0.58
ATL3Q6DD88 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ATL3Q6DD88 UNC93B6-202ENST00000528242 690 ntBASIC18.69■□□□□ 0.58
ATL3Q6DD88 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.69■□□□□ 0.58
ATL3Q6DD88 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.69■□□□□ 0.58
ATL3Q6DD88 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.69■□□□□ 0.58
ATL3Q6DD88 AL078644.1-201ENST00000609881 752 ntBASIC18.69■□□□□ 0.58
ATL3Q6DD88 AL691432.3-201ENST00000621860 400 ntBASIC18.69■□□□□ 0.58
ATL3Q6DD88 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC18.69■□□□□ 0.58
ATL3Q6DD88 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
ATL3Q6DD88 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ATL3Q6DD88 BANP-201ENST00000286122 2368 ntTSL 5 BASIC18.69■□□□□ 0.58
ATL3Q6DD88 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC18.69■□□□□ 0.58
ATL3Q6DD88 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATL3Q6DD88 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC18.69■□□□□ 0.58
ATL3Q6DD88 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATL3Q6DD88 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ATL3Q6DD88 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
ATL3Q6DD88 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
ATL3Q6DD88 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC18.69■□□□□ 0.58
ATL3Q6DD88 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.68■□□□□ 0.58
ATL3Q6DD88 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATL3Q6DD88 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.68■□□□□ 0.58
ATL3Q6DD88 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATL3Q6DD88 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATL3Q6DD88 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ATL3Q6DD88 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATL3Q6DD88 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
ATL3Q6DD88 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATL3Q6DD88 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
ATL3Q6DD88 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATL3Q6DD88 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATL3Q6DD88 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.68■□□□□ 0.58
ATL3Q6DD88 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATL3Q6DD88 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATL3Q6DD88 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ATL3Q6DD88 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATL3Q6DD88 AL031284.1-201ENST00000419297 478 ntBASIC18.68■□□□□ 0.58
ATL3Q6DD88 AC098831.1-202ENST00000438821 336 ntBASIC18.68■□□□□ 0.58
ATL3Q6DD88 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.68■□□□□ 0.58
ATL3Q6DD88 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ATL3Q6DD88 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC18.68■□□□□ 0.58
ATL3Q6DD88 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
ATL3Q6DD88 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.68■□□□□ 0.58
ATL3Q6DD88 QPRT-203ENST00000562473 579 ntTSL 3 BASIC18.68■□□□□ 0.58
ATL3Q6DD88 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
ATL3Q6DD88 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ATL3Q6DD88 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
ATL3Q6DD88 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ATL3Q6DD88 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ATL3Q6DD88 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
ATL3Q6DD88 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC18.68■□□□□ 0.58
ATL3Q6DD88 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATL3Q6DD88 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATL3Q6DD88 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
ATL3Q6DD88 LOX-206ENST00000639739 1626 ntTSL 5 BASIC18.67■□□□□ 0.58
ATL3Q6DD88 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ATL3Q6DD88 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATL3Q6DD88 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATL3Q6DD88 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC18.67■□□□□ 0.58
ATL3Q6DD88 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATL3Q6DD88 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATL3Q6DD88 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATL3Q6DD88 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATL3Q6DD88 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.67■□□□□ 0.58
ATL3Q6DD88 FALEC-201ENST00000416894 566 ntTSL 3 BASIC18.67■□□□□ 0.58
ATL3Q6DD88 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC18.67■□□□□ 0.58
ATL3Q6DD88 AC079781.3-201ENST00000449110 356 ntBASIC18.67■□□□□ 0.58
ATL3Q6DD88 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC18.67■□□□□ 0.58
ATL3Q6DD88 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
ATL3Q6DD88 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.67■□□□□ 0.58
ATL3Q6DD88 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC18.67■□□□□ 0.58
ATL3Q6DD88 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.67■□□□□ 0.58
ATL3Q6DD88 MIR7706-201ENST00000613747 67 ntBASIC18.67■□□□□ 0.58
ATL3Q6DD88 AC007064.4-201ENST00000637740 555 ntBASIC18.67■□□□□ 0.58
ATL3Q6DD88 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
ATL3Q6DD88 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATL3Q6DD88 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC18.67■□□□□ 0.58
ATL3Q6DD88 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ATL3Q6DD88 FES-204ENST00000414248 2327 ntTSL 2 BASIC18.67■□□□□ 0.58
ATL3Q6DD88 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
ATL3Q6DD88 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
ATL3Q6DD88 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATL3Q6DD88 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.67■□□□□ 0.58
ATL3Q6DD88 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.67■□□□□ 0.58
ATL3Q6DD88 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATL3Q6DD88 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ATL3Q6DD88 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ATL3Q6DD88 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ATL3Q6DD88 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATL3Q6DD88 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATL3Q6DD88 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ATL3Q6DD88 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ATL3Q6DD88 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ATL3Q6DD88 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATL3Q6DD88 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
ATL3Q6DD88 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC18.66■□□□□ 0.58
ATL3Q6DD88 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATL3Q6DD88 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms