Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC18.84■□□□□ 0.61
COL2A1P02458 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC18.84■□□□□ 0.61
COL2A1P02458 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC18.84■□□□□ 0.61
COL2A1P02458 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC18.84■□□□□ 0.61
COL2A1P02458 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
COL2A1P02458 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC18.84■□□□□ 0.61
COL2A1P02458 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL2A1P02458 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC18.84■□□□□ 0.61
COL2A1P02458 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.84■□□□□ 0.61
COL2A1P02458 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC18.84■□□□□ 0.61
COL2A1P02458 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.84■□□□□ 0.61
COL2A1P02458 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
COL2A1P02458 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
COL2A1P02458 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC18.84■□□□□ 0.61
COL2A1P02458 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL2A1P02458 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL2A1P02458 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL2A1P02458 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
COL2A1P02458 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL2A1P02458 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL2A1P02458 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC18.84■□□□□ 0.61
COL2A1P02458 HNRNPA1P48-201ENST00000562726 1377 ntBASIC18.84■□□□□ 0.61
COL2A1P02458 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
COL2A1P02458 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC18.84■□□□□ 0.61
COL2A1P02458 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
COL2A1P02458 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL2A1P02458 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL2A1P02458 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC18.84■□□□□ 0.61
COL2A1P02458 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL2A1P02458 USP40-206ENST00000443711 628 ntTSL 2 BASIC18.84■□□□□ 0.61
COL2A1P02458 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC18.84■□□□□ 0.61
COL2A1P02458 NME4-207ENST00000450036 985 ntTSL 3 BASIC18.84■□□□□ 0.61
COL2A1P02458 RAB43P1-201ENST00000561790 589 ntBASIC18.84■□□□□ 0.61
COL2A1P02458 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC18.84■□□□□ 0.61
COL2A1P02458 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC18.84■□□□□ 0.61
COL2A1P02458 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC18.84■□□□□ 0.61
COL2A1P02458 AC010319.3-201ENST00000597028 470 ntBASIC18.84■□□□□ 0.61
COL2A1P02458 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL2A1P02458 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
COL2A1P02458 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL2A1P02458 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL2A1P02458 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL2A1P02458 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL2A1P02458 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL2A1P02458 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
COL2A1P02458 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC18.83■□□□□ 0.61
COL2A1P02458 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL2A1P02458 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL2A1P02458 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL2A1P02458 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL2A1P02458 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL2A1P02458 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL2A1P02458 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL2A1P02458 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL2A1P02458 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL2A1P02458 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.6
COL2A1P02458 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
COL2A1P02458 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC18.83■□□□□ 0.6
COL2A1P02458 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC18.83■□□□□ 0.6
COL2A1P02458 AC124283.3-201ENST00000570869 594 ntBASIC18.83■□□□□ 0.6
COL2A1P02458 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
COL2A1P02458 AL033527.5-201ENST00000641382 801 ntBASIC18.83■□□□□ 0.6
COL2A1P02458 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.6
COL2A1P02458 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL2A1P02458 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL2A1P02458 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC18.83■□□□□ 0.6
COL2A1P02458 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.83■□□□□ 0.6
COL2A1P02458 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
COL2A1P02458 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC18.82■□□□□ 0.6
COL2A1P02458 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC18.82■□□□□ 0.6
COL2A1P02458 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL2A1P02458 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL2A1P02458 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
COL2A1P02458 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL2A1P02458 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.82■□□□□ 0.6
COL2A1P02458 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL2A1P02458 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL2A1P02458 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL2A1P02458 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
COL2A1P02458 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL2A1P02458 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL2A1P02458 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL2A1P02458 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL2A1P02458 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL2A1P02458 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC18.82■□□□□ 0.6
COL2A1P02458 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC18.82■□□□□ 0.6
COL2A1P02458 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC18.82■□□□□ 0.6
COL2A1P02458 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC18.82■□□□□ 0.6
COL2A1P02458 MIR5189-201ENST00000577370 114 ntBASIC18.82■□□□□ 0.6
COL2A1P02458 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
COL2A1P02458 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
COL2A1P02458 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL2A1P02458 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL2A1P02458 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL2A1P02458 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18.82■□□□□ 0.6
COL2A1P02458 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL2A1P02458 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL2A1P02458 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL2A1P02458 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL2A1P02458 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms