Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CHFRQ96EP1 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.62■□□□□ 0.25
CHFRQ96EP1 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CHFRQ96EP1 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.61■□□□□ 0.25
CHFRQ96EP1 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CHFRQ96EP1 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CHFRQ96EP1 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC16.61■□□□□ 0.25
CHFRQ96EP1 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
CHFRQ96EP1 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
CHFRQ96EP1 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CHFRQ96EP1 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.61■□□□□ 0.25
CHFRQ96EP1 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
CHFRQ96EP1 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
CHFRQ96EP1 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CHFRQ96EP1 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CHFRQ96EP1 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
CHFRQ96EP1 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CHFRQ96EP1 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC16.61■□□□□ 0.25
CHFRQ96EP1 AC087499.6-201ENST00000411576 835 ntBASIC16.61■□□□□ 0.25
CHFRQ96EP1 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC16.61■□□□□ 0.25
CHFRQ96EP1 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CHFRQ96EP1 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.61■□□□□ 0.25
CHFRQ96EP1 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC16.61■□□□□ 0.25
CHFRQ96EP1 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CHFRQ96EP1 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.61■□□□□ 0.25
CHFRQ96EP1 AC026979.3-201ENST00000607315 403 ntBASIC16.61■□□□□ 0.25
CHFRQ96EP1 AC007431.3-201ENST00000623221 587 ntBASIC16.61■□□□□ 0.25
CHFRQ96EP1 AL109936.8-201ENST00000641772 604 ntBASIC16.61■□□□□ 0.25
CHFRQ96EP1 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CHFRQ96EP1 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
CHFRQ96EP1 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.61■□□□□ 0.25
CHFRQ96EP1 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CHFRQ96EP1 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
CHFRQ96EP1 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CHFRQ96EP1 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
CHFRQ96EP1 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC16.61■□□□□ 0.25
CHFRQ96EP1 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.61■□□□□ 0.25
CHFRQ96EP1 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CHFRQ96EP1 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CHFRQ96EP1 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CHFRQ96EP1 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
CHFRQ96EP1 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CHFRQ96EP1 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHFRQ96EP1 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CHFRQ96EP1 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHFRQ96EP1 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
CHFRQ96EP1 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHFRQ96EP1 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHFRQ96EP1 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.6■□□□□ 0.25
CHFRQ96EP1 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CHFRQ96EP1 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.6■□□□□ 0.25
CHFRQ96EP1 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHFRQ96EP1 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CHFRQ96EP1 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC16.6■□□□□ 0.25
CHFRQ96EP1 MXI1-205ENST00000393134 889 ntTSL 2 BASIC16.6■□□□□ 0.25
CHFRQ96EP1 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHFRQ96EP1 AL512384.1-201ENST00000406683 331 ntBASIC16.6■□□□□ 0.25
CHFRQ96EP1 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.6■□□□□ 0.25
CHFRQ96EP1 AC098850.1-201ENST00000419919 790 ntBASIC16.6■□□□□ 0.25
CHFRQ96EP1 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC16.6■□□□□ 0.25
CHFRQ96EP1 RN7SL752P-201ENST00000463779 287 ntBASIC16.6■□□□□ 0.25
CHFRQ96EP1 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.6■□□□□ 0.25
CHFRQ96EP1 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CHFRQ96EP1 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC16.6■□□□□ 0.25
CHFRQ96EP1 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC16.6■□□□□ 0.25
CHFRQ96EP1 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CHFRQ96EP1 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.6■□□□□ 0.25
CHFRQ96EP1 MIR6752-201ENST00000618442 71 ntBASIC16.6■□□□□ 0.25
CHFRQ96EP1 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHFRQ96EP1 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.6■□□□□ 0.25
CHFRQ96EP1 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CHFRQ96EP1 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHFRQ96EP1 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHFRQ96EP1 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.6■□□□□ 0.25
CHFRQ96EP1 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHFRQ96EP1 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHFRQ96EP1 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHFRQ96EP1 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CHFRQ96EP1 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHFRQ96EP1 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.6■□□□□ 0.25
CHFRQ96EP1 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.6■□□□□ 0.25
CHFRQ96EP1 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHFRQ96EP1 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CHFRQ96EP1 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CHFRQ96EP1 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.6■□□□□ 0.25
CHFRQ96EP1 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
CHFRQ96EP1 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CHFRQ96EP1 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CHFRQ96EP1 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CHFRQ96EP1 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.59■□□□□ 0.25
CHFRQ96EP1 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CHFRQ96EP1 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CHFRQ96EP1 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CHFRQ96EP1 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CHFRQ96EP1 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CHFRQ96EP1 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.59■□□□□ 0.25
CHFRQ96EP1 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
CHFRQ96EP1 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.59■□□□□ 0.25
CHFRQ96EP1 AP006294.1-201ENST00000415407 339 ntBASIC16.59■□□□□ 0.25
CHFRQ96EP1 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms