Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 AL158212.4-201ENST00000624062 1286 ntBASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 ABBA01031660.1-201ENST00000635219 756 ntBASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 AL391256.1-201ENST00000443260 1855 ntBASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 RN7SL399P-201ENST00000471648 279 ntBASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 AC026979.3-201ENST00000607315 403 ntBASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC19.77■□□□□ 0.76
CCDC88AQ3V6T2 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.75
CCDC88AQ3V6T2 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 AC105020.1-201ENST00000435356 2205 ntBASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 AZGP1P1-201ENST00000411909 902 ntBASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 CALR4P-201ENST00000431943 946 ntBASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 FO681548.1-201ENST00000455617 1132 ntBASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 AL118558.3-201ENST00000607414 1079 ntBASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC88AQ3V6T2 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 AL355864.2-201ENST00000447420 863 ntBASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 PTP4A1P2-201ENST00000546033 454 ntBASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms