Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC20.64■□□□□ 0.89
NPHP1O15259 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC20.64■□□□□ 0.89
NPHP1O15259 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC20.64■□□□□ 0.89
NPHP1O15259 POLE2-203ENST00000553805 496 ntTSL 2 BASIC20.64■□□□□ 0.89
NPHP1O15259 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC20.64■□□□□ 0.89
NPHP1O15259 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC20.64■□□□□ 0.89
NPHP1O15259 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP1O15259 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP1O15259 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP1O15259 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP1O15259 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP1O15259 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP1O15259 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP1O15259 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
NPHP1O15259 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP1O15259 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP1O15259 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP1O15259 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP1O15259 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
NPHP1O15259 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP1O15259 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC20.63■□□□□ 0.89
NPHP1O15259 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.63■□□□□ 0.89
NPHP1O15259 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
NPHP1O15259 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP1O15259 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP1O15259 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP1O15259 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP1O15259 AL512384.1-201ENST00000406683 331 ntBASIC20.63■□□□□ 0.89
NPHP1O15259 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC20.63■□□□□ 0.89
NPHP1O15259 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC20.63■□□□□ 0.89
NPHP1O15259 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP1O15259 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC20.63■□□□□ 0.89
NPHP1O15259 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
NPHP1O15259 AC008494.3-201ENST00000606615 944 ntBASIC20.63■□□□□ 0.89
NPHP1O15259 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
NPHP1O15259 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
NPHP1O15259 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP1O15259 AC006277.1-201ENST00000624348 1610 ntBASIC20.63■□□□□ 0.89
NPHP1O15259 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC20.63■□□□□ 0.89
NPHP1O15259 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP1O15259 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP1O15259 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP1O15259 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
NPHP1O15259 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP1O15259 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
NPHP1O15259 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
NPHP1O15259 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP1O15259 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
NPHP1O15259 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP1O15259 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP1O15259 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP1O15259 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP1O15259 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP1O15259 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP1O15259 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP1O15259 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
NPHP1O15259 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
NPHP1O15259 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP1O15259 SERBP1P3-201ENST00000459980 809 ntBASIC20.62■□□□□ 0.89
NPHP1O15259 BANF1P1-201ENST00000553684 263 ntBASIC20.62■□□□□ 0.89
NPHP1O15259 AL133215.2-201ENST00000609242 977 ntBASIC20.62■□□□□ 0.89
NPHP1O15259 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC20.62■□□□□ 0.89
NPHP1O15259 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
NPHP1O15259 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC20.62■□□□□ 0.89
NPHP1O15259 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP1O15259 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP1O15259 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC20.62■□□□□ 0.89
NPHP1O15259 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP1O15259 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP1O15259 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP1O15259 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP1O15259 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC20.62■□□□□ 0.89
NPHP1O15259 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP1O15259 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC20.61■□□□□ 0.89
NPHP1O15259 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP1O15259 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
NPHP1O15259 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP1O15259 FST-202ENST00000396947 2538 ntTSL 5 BASIC20.61■□□□□ 0.89
NPHP1O15259 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP1O15259 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP1O15259 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP1O15259 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP1O15259 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP1O15259 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP1O15259 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP1O15259 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC20.61■□□□□ 0.89
NPHP1O15259 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP1O15259 AC093004.1-201ENST00000508850 424 ntBASIC20.61■□□□□ 0.89
NPHP1O15259 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC20.61■□□□□ 0.89
NPHP1O15259 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC20.61■□□□□ 0.89
NPHP1O15259 AC132938.2-201ENST00000579188 680 ntBASIC20.61■□□□□ 0.89
NPHP1O15259 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP1O15259 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
NPHP1O15259 AC007431.3-201ENST00000623221 587 ntBASIC20.61■□□□□ 0.89
NPHP1O15259 AL591163.1-201ENST00000641757 987 ntBASIC20.61■□□□□ 0.89
NPHP1O15259 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP1O15259 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP1O15259 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC20.61■□□□□ 0.89
NPHP1O15259 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC20.61■□□□□ 0.89
NPHP1O15259 LINC02012-201ENST00000608206 1725 ntBASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms