Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM4Q9C037 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
TRIM4Q9C037 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.55■□□□□ 0.24
TRIM4Q9C037 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM4Q9C037 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM4Q9C037 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM4Q9C037 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM4Q9C037 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM4Q9C037 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM4Q9C037 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM4Q9C037 SLC25A1P3-201ENST00000395415 828 ntBASIC16.55■□□□□ 0.24
TRIM4Q9C037 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.55■□□□□ 0.24
TRIM4Q9C037 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC16.55■□□□□ 0.24
TRIM4Q9C037 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM4Q9C037 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.55■□□□□ 0.24
TRIM4Q9C037 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.55■□□□□ 0.24
TRIM4Q9C037 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.55■□□□□ 0.24
TRIM4Q9C037 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.55■□□□□ 0.24
TRIM4Q9C037 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.55■□□□□ 0.24
TRIM4Q9C037 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.55■□□□□ 0.24
TRIM4Q9C037 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.55■□□□□ 0.24
TRIM4Q9C037 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC16.55■□□□□ 0.24
TRIM4Q9C037 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
TRIM4Q9C037 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM4Q9C037 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM4Q9C037 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.55■□□□□ 0.24
TRIM4Q9C037 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.55■□□□□ 0.24
TRIM4Q9C037 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM4Q9C037 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM4Q9C037 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.55■□□□□ 0.24
TRIM4Q9C037 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.55■□□□□ 0.24
TRIM4Q9C037 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM4Q9C037 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
TRIM4Q9C037 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM4Q9C037 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM4Q9C037 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM4Q9C037 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM4Q9C037 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM4Q9C037 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM4Q9C037 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM4Q9C037 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM4Q9C037 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM4Q9C037 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
TRIM4Q9C037 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM4Q9C037 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM4Q9C037 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM4Q9C037 MIR770-201ENST00000390219 98 ntBASIC16.54■□□□□ 0.24
TRIM4Q9C037 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM4Q9C037 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
TRIM4Q9C037 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM4Q9C037 OR7E14P-202ENST00000530490 1290 ntBASIC16.54■□□□□ 0.24
TRIM4Q9C037 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16.54■□□□□ 0.24
TRIM4Q9C037 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM4Q9C037 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.54■□□□□ 0.24
TRIM4Q9C037 AC019129.2-201ENST00000609837 1235 ntBASIC16.54■□□□□ 0.24
TRIM4Q9C037 AL139327.4-201ENST00000612362 153 ntBASIC16.54■□□□□ 0.24
TRIM4Q9C037 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM4Q9C037 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.54■□□□□ 0.24
TRIM4Q9C037 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM4Q9C037 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM4Q9C037 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
TRIM4Q9C037 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM4Q9C037 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM4Q9C037 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
TRIM4Q9C037 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM4Q9C037 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM4Q9C037 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.54■□□□□ 0.24
TRIM4Q9C037 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.54■□□□□ 0.24
TRIM4Q9C037 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM4Q9C037 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
TRIM4Q9C037 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM4Q9C037 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM4Q9C037 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM4Q9C037 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC16.53■□□□□ 0.24
TRIM4Q9C037 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
TRIM4Q9C037 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM4Q9C037 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM4Q9C037 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM4Q9C037 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM4Q9C037 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM4Q9C037 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
TRIM4Q9C037 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
TRIM4Q9C037 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM4Q9C037 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM4Q9C037 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
TRIM4Q9C037 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
TRIM4Q9C037 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM4Q9C037 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.53■□□□□ 0.24
TRIM4Q9C037 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM4Q9C037 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.53■□□□□ 0.24
TRIM4Q9C037 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.53■□□□□ 0.24
TRIM4Q9C037 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM4Q9C037 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM4Q9C037 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.53■□□□□ 0.24
TRIM4Q9C037 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM4Q9C037 MTDHP5-201ENST00000598980 586 ntBASIC16.53■□□□□ 0.24
TRIM4Q9C037 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM4Q9C037 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM4Q9C037 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM4Q9C037 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms