Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VCPP55072 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCPP55072 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.62■□□□□ 0.41
VCPP55072 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCPP55072 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
VCPP55072 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VCPP55072 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
VCPP55072 AC002056.1-201ENST00000395613 760 ntBASIC17.62■□□□□ 0.41
VCPP55072 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
VCPP55072 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
VCPP55072 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.62■□□□□ 0.41
VCPP55072 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCPP55072 ACTL9-202ENST00000612068 1252 ntBASIC17.62■□□□□ 0.41
VCPP55072 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.62■□□□□ 0.41
VCPP55072 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCPP55072 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VCPP55072 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
VCPP55072 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCPP55072 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.62■□□□□ 0.41
VCPP55072 HLA-A-202ENST00000376806 1854 ntBASIC17.62■□□□□ 0.41
VCPP55072 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VCPP55072 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VCPP55072 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.62■□□□□ 0.41
VCPP55072 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.62■□□□□ 0.41
VCPP55072 DOC2GP-204ENST00000639052 2548 ntBASIC17.62■□□□□ 0.41
VCPP55072 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCPP55072 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCPP55072 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VCPP55072 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
VCPP55072 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCPP55072 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCPP55072 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCPP55072 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VCPP55072 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.62■□□□□ 0.41
VCPP55072 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VCPP55072 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.62■□□□□ 0.41
VCPP55072 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCPP55072 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCPP55072 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
VCPP55072 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.61■□□□□ 0.41
VCPP55072 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCPP55072 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.61■□□□□ 0.41
VCPP55072 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.61■□□□□ 0.41
VCPP55072 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VCPP55072 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
VCPP55072 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCPP55072 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCPP55072 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCPP55072 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
VCPP55072 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCPP55072 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCPP55072 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VCPP55072 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCPP55072 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.61■□□□□ 0.41
VCPP55072 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCPP55072 AL513480.1-201ENST00000451731 511 ntBASIC17.61■□□□□ 0.41
VCPP55072 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCPP55072 AC079140.1-201ENST00000508039 487 ntBASIC17.61■□□□□ 0.41
VCPP55072 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC17.61■□□□□ 0.41
VCPP55072 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCPP55072 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.61■□□□□ 0.41
VCPP55072 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCPP55072 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.61■□□□□ 0.41
VCPP55072 TDG-209ENST00000544861 1387 ntTSL 2 BASIC17.61■□□□□ 0.41
VCPP55072 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCPP55072 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.61■□□□□ 0.41
VCPP55072 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCPP55072 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
VCPP55072 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCPP55072 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCPP55072 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VCPP55072 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VCPP55072 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCPP55072 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.6■□□□□ 0.41
VCPP55072 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCPP55072 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
VCPP55072 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCPP55072 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCPP55072 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC17.6■□□□□ 0.41
VCPP55072 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.6■□□□□ 0.41
VCPP55072 RBPMS2P1-201ENST00000437762 623 ntBASIC17.6■□□□□ 0.41
VCPP55072 FAM185BP-201ENST00000443595 716 ntBASIC17.6■□□□□ 0.41
VCPP55072 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.6■□□□□ 0.41
VCPP55072 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC17.6■□□□□ 0.41
VCPP55072 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VCPP55072 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
VCPP55072 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.6■□□□□ 0.41
VCPP55072 AC107918.2-201ENST00000530817 355 ntBASIC17.6■□□□□ 0.41
VCPP55072 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCPP55072 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
VCPP55072 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCPP55072 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.6■□□□□ 0.41
VCPP55072 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
VCPP55072 NFIC-211ENST00000641145 8399 ntBASIC17.6■□□□□ 0.41
VCPP55072 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
VCPP55072 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCPP55072 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VCPP55072 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCPP55072 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VCPP55072 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms