Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CLTCL1P53675 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CLTCL1P53675 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
CLTCL1P53675 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CLTCL1P53675 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CLTCL1P53675 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC23.12■■□□□ 1.29
CLTCL1P53675 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CLTCL1P53675 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CLTCL1P53675 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CLTCL1P53675 AC234783.1-201ENST00000441761 496 ntBASIC23.11■■□□□ 1.29
CLTCL1P53675 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC23.11■■□□□ 1.29
CLTCL1P53675 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CLTCL1P53675 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC23.11■■□□□ 1.29
CLTCL1P53675 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC23.11■■□□□ 1.29
CLTCL1P53675 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC23.11■■□□□ 1.29
CLTCL1P53675 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
CLTCL1P53675 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC23.11■■□□□ 1.29
CLTCL1P53675 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC23.11■■□□□ 1.29
CLTCL1P53675 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
CLTCL1P53675 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC23.11■■□□□ 1.29
CLTCL1P53675 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CLTCL1P53675 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CLTCL1P53675 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
CLTCL1P53675 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC23.11■■□□□ 1.29
CLTCL1P53675 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
CLTCL1P53675 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC23.11■■□□□ 1.29
CLTCL1P53675 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
CLTCL1P53675 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CLTCL1P53675 KRT223P-202ENST00000449164 1292 ntBASIC23.11■■□□□ 1.29
CLTCL1P53675 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC23.11■■□□□ 1.29
CLTCL1P53675 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC23.11■■□□□ 1.29
CLTCL1P53675 AC015936.2-201ENST00000593177 259 ntBASIC23.11■■□□□ 1.29
CLTCL1P53675 Six3os1_5.1-201ENST00000611000 271 ntBASIC23.11■■□□□ 1.29
CLTCL1P53675 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC23.11■■□□□ 1.29
CLTCL1P53675 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CLTCL1P53675 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
CLTCL1P53675 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
CLTCL1P53675 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC23.1■■□□□ 1.29
CLTCL1P53675 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
CLTCL1P53675 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC23.1■■□□□ 1.29
CLTCL1P53675 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC23.1■■□□□ 1.29
CLTCL1P53675 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC23.1■■□□□ 1.29
CLTCL1P53675 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
CLTCL1P53675 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC23.1■■□□□ 1.29
CLTCL1P53675 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
CLTCL1P53675 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
CLTCL1P53675 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CLTCL1P53675 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC23.1■■□□□ 1.29
CLTCL1P53675 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CLTCL1P53675 AC018665.1-201ENST00000622927 1362 ntBASIC23.1■■□□□ 1.29
CLTCL1P53675 NSL1-201ENST00000366976 722 ntTSL 2 BASIC23.1■■□□□ 1.29
CLTCL1P53675 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
CLTCL1P53675 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CLTCL1P53675 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CLTCL1P53675 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC23.1■■□□□ 1.29
CLTCL1P53675 NEU3-203ENST00000529024 581 ntTSL 3 BASIC23.1■■□□□ 1.29
CLTCL1P53675 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC23.1■■□□□ 1.29
CLTCL1P53675 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC23.1■■□□□ 1.29
CLTCL1P53675 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC23.1■■□□□ 1.29
CLTCL1P53675 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CLTCL1P53675 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CLTCL1P53675 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CLTCL1P53675 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CLTCL1P53675 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC23.1■■□□□ 1.29
CLTCL1P53675 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC23.1■■□□□ 1.29
CLTCL1P53675 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CLTCL1P53675 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CLTCL1P53675 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC23.09■■□□□ 1.29
CLTCL1P53675 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CLTCL1P53675 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CLTCL1P53675 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CLTCL1P53675 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
CLTCL1P53675 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CLTCL1P53675 ELP6-209ENST00000446787 894 ntTSL 3 BASIC23.09■■□□□ 1.29
CLTCL1P53675 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC23.09■■□□□ 1.29
CLTCL1P53675 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC23.09■■□□□ 1.29
CLTCL1P53675 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC23.09■■□□□ 1.29
CLTCL1P53675 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CLTCL1P53675 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
CLTCL1P53675 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CLTCL1P53675 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC23.09■■□□□ 1.29
CLTCL1P53675 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC23.09■■□□□ 1.29
CLTCL1P53675 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC23.09■■□□□ 1.29
CLTCL1P53675 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CLTCL1P53675 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CLTCL1P53675 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CLTCL1P53675 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CLTCL1P53675 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CLTCL1P53675 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
CLTCL1P53675 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
CLTCL1P53675 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CLTCL1P53675 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC23.09■■□□□ 1.29
CLTCL1P53675 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
CLTCL1P53675 INTS4P2-202ENST00000614726 2019 ntBASIC23.09■■□□□ 1.29
CLTCL1P53675 ZBTB45P2-201ENST00000452245 1531 ntBASIC23.08■■□□□ 1.29
CLTCL1P53675 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC23.08■■□□□ 1.29
CLTCL1P53675 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
CLTCL1P53675 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CLTCL1P53675 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
CLTCL1P53675 MPV17-208ENST00000405076 603 ntTSL 5 BASIC23.08■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms