Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
HNF4AP41235 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HNF4AP41235 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16■□□□□ 0.15
HNF4AP41235 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16■□□□□ 0.15
HNF4AP41235 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
HNF4AP41235 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
HNF4AP41235 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HNF4AP41235 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC15.99■□□□□ 0.15
HNF4AP41235 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
HNF4AP41235 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.99■□□□□ 0.15
HNF4AP41235 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
HNF4AP41235 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HNF4AP41235 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HNF4AP41235 AL513523.2-202ENST00000427283 2040 ntBASIC15.99■□□□□ 0.15
HNF4AP41235 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HNF4AP41235 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
HNF4AP41235 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HNF4AP41235 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.99■□□□□ 0.15
HNF4AP41235 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HNF4AP41235 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
HNF4AP41235 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
HNF4AP41235 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC15.99■□□□□ 0.15
HNF4AP41235 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
HNF4AP41235 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HNF4AP41235 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HNF4AP41235 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.99■□□□□ 0.15
HNF4AP41235 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
HNF4AP41235 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.99■□□□□ 0.15
HNF4AP41235 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
HNF4AP41235 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.99■□□□□ 0.15
HNF4AP41235 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HNF4AP41235 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.99■□□□□ 0.15
HNF4AP41235 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.99■□□□□ 0.15
HNF4AP41235 RHOQP3-201ENST00000437982 621 ntBASIC15.99■□□□□ 0.15
HNF4AP41235 AL591424.1-201ENST00000442569 1213 ntBASIC15.99■□□□□ 0.15
HNF4AP41235 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.99■□□□□ 0.15
HNF4AP41235 KRT18P58-201ENST00000527480 1120 ntBASIC15.99■□□□□ 0.15
HNF4AP41235 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
HNF4AP41235 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HNF4AP41235 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.99■□□□□ 0.15
HNF4AP41235 AL031055.1-201ENST00000606362 631 ntBASIC15.99■□□□□ 0.15
HNF4AP41235 FAM197Y3-203ENST00000618346 717 ntBASIC15.99■□□□□ 0.15
HNF4AP41235 AL513190.1-201ENST00000621254 727 ntBASIC15.99■□□□□ 0.15
HNF4AP41235 AC007064.4-201ENST00000637740 555 ntBASIC15.99■□□□□ 0.15
HNF4AP41235 AC092865.6-201ENST00000642101 219 ntBASIC15.99■□□□□ 0.15
HNF4AP41235 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.99■□□□□ 0.15
HNF4AP41235 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
HNF4AP41235 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HNF4AP41235 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HNF4AP41235 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HNF4AP41235 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
HNF4AP41235 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
HNF4AP41235 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HNF4AP41235 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
HNF4AP41235 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.99■□□□□ 0.15
HNF4AP41235 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HNF4AP41235 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HNF4AP41235 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
HNF4AP41235 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HNF4AP41235 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HNF4AP41235 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.99■□□□□ 0.15
HNF4AP41235 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HNF4AP41235 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HNF4AP41235 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.98■□□□□ 0.15
HNF4AP41235 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
HNF4AP41235 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HNF4AP41235 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
HNF4AP41235 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
HNF4AP41235 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
HNF4AP41235 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
HNF4AP41235 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.98■□□□□ 0.15
HNF4AP41235 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
HNF4AP41235 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
HNF4AP41235 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HNF4AP41235 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.98■□□□□ 0.15
HNF4AP41235 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.98■□□□□ 0.15
HNF4AP41235 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.98■□□□□ 0.15
HNF4AP41235 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HNF4AP41235 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.98■□□□□ 0.15
HNF4AP41235 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.98■□□□□ 0.15
HNF4AP41235 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HNF4AP41235 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.98■□□□□ 0.15
HNF4AP41235 AC026691.1-201ENST00000602502 2017 ntBASIC15.98■□□□□ 0.15
HNF4AP41235 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HNF4AP41235 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.98■□□□□ 0.15
HNF4AP41235 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HNF4AP41235 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
HNF4AP41235 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HNF4AP41235 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HNF4AP41235 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HNF4AP41235 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC15.98■□□□□ 0.15
HNF4AP41235 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HNF4AP41235 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
HNF4AP41235 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.97■□□□□ 0.15
HNF4AP41235 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.97■□□□□ 0.15
HNF4AP41235 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms