Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC11.62□□□□□ -0.55
PRKDCP78527 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
PRKDCP78527 TEX30-203ENST00000376022 828 ntTSL 2 BASIC11.62□□□□□ -0.55
PRKDCP78527 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC11.62□□□□□ -0.55
PRKDCP78527 KRTAP19-9P-201ENST00000421795 191 ntBASIC11.62□□□□□ -0.55
PRKDCP78527 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC11.62□□□□□ -0.55
PRKDCP78527 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
PRKDCP78527 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
PRKDCP78527 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC11.62□□□□□ -0.55
PRKDCP78527 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC11.62□□□□□ -0.55
PRKDCP78527 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC11.62□□□□□ -0.55
PRKDCP78527 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC11.62□□□□□ -0.55
PRKDCP78527 AC135050.7-201ENST00000624508 2218 ntBASIC11.62□□□□□ -0.55
PRKDCP78527 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC11.62□□□□□ -0.55
PRKDCP78527 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC11.62□□□□□ -0.55
PRKDCP78527 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
PRKDCP78527 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
PRKDCP78527 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC11.62□□□□□ -0.55
PRKDCP78527 GGT4P-201ENST00000623672 1708 ntBASIC11.62□□□□□ -0.55
PRKDCP78527 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC11.62□□□□□ -0.55
PRKDCP78527 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC11.62□□□□□ -0.55
PRKDCP78527 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC11.62□□□□□ -0.55
PRKDCP78527 NKG7-204ENST00000595217 816 ntTSL 2 BASIC11.62□□□□□ -0.55
PRKDCP78527 ECM1P1-201ENST00000604092 1279 ntBASIC11.62□□□□□ -0.55
PRKDCP78527 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
PRKDCP78527 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC11.62□□□□□ -0.55
PRKDCP78527 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC11.62□□□□□ -0.55
PRKDCP78527 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
PRKDCP78527 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
PRKDCP78527 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
PRKDCP78527 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
PRKDCP78527 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC11.62□□□□□ -0.55
PRKDCP78527 C1QBPP1-201ENST00000400117 770 ntBASIC11.62□□□□□ -0.55
PRKDCP78527 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC11.62□□□□□ -0.55
PRKDCP78527 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
PRKDCP78527 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC11.62□□□□□ -0.55
PRKDCP78527 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
PRKDCP78527 PRSS30P-206ENST00000641773 873 ntBASIC11.62□□□□□ -0.55
PRKDCP78527 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
PRKDCP78527 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
PRKDCP78527 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC11.61□□□□□ -0.55
PRKDCP78527 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC11.61□□□□□ -0.55
PRKDCP78527 AC097065.1-201ENST00000425737 517 ntBASIC11.61□□□□□ -0.55
PRKDCP78527 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC11.61□□□□□ -0.55
PRKDCP78527 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
PRKDCP78527 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
PRKDCP78527 AP001065.2-201ENST00000617205 644 ntBASIC11.61□□□□□ -0.55
PRKDCP78527 AC009084.3-201ENST00000623356 437 ntBASIC11.61□□□□□ -0.55
PRKDCP78527 LINC01451-201ENST00000623792 534 ntBASIC11.61□□□□□ -0.55
PRKDCP78527 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
PRKDCP78527 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
PRKDCP78527 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC11.61□□□□□ -0.55
PRKDCP78527 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
PRKDCP78527 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
PRKDCP78527 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
PRKDCP78527 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
PRKDCP78527 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
PRKDCP78527 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
PRKDCP78527 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC11.61□□□□□ -0.55
PRKDCP78527 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
PRKDCP78527 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
PRKDCP78527 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
PRKDCP78527 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC11.61□□□□□ -0.55
PRKDCP78527 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
PRKDCP78527 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC11.61□□□□□ -0.55
PRKDCP78527 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
PRKDCP78527 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC11.61□□□□□ -0.55
PRKDCP78527 CYP4F24P-201ENST00000586049 1580 ntBASIC11.61□□□□□ -0.55
PRKDCP78527 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC11.61□□□□□ -0.55
PRKDCP78527 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
PRKDCP78527 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
PRKDCP78527 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
PRKDCP78527 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC11.61□□□□□ -0.55
PRKDCP78527 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC11.61□□□□□ -0.55
PRKDCP78527 COX6A1P2-201ENST00000620597 330 ntBASIC11.61□□□□□ -0.55
PRKDCP78527 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC11.61□□□□□ -0.55
PRKDCP78527 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC11.61□□□□□ -0.55
PRKDCP78527 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC11.61□□□□□ -0.55
PRKDCP78527 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC11.61□□□□□ -0.55
PRKDCP78527 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
PRKDCP78527 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC11.6□□□□□ -0.55
PRKDCP78527 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC11.6□□□□□ -0.55
PRKDCP78527 COX5BP1-201ENST00000507622 393 ntBASIC11.6□□□□□ -0.55
PRKDCP78527 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC11.6□□□□□ -0.55
PRKDCP78527 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC11.6□□□□□ -0.55
PRKDCP78527 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC11.6□□□□□ -0.55
PRKDCP78527 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC11.6□□□□□ -0.55
PRKDCP78527 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
PRKDCP78527 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC11.6□□□□□ -0.55
PRKDCP78527 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC11.6□□□□□ -0.55
PRKDCP78527 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
PRKDCP78527 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC11.6□□□□□ -0.55
PRKDCP78527 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
PRKDCP78527 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
PRKDCP78527 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
PRKDCP78527 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC11.6□□□□□ -0.55
PRKDCP78527 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
PRKDCP78527 TBCB-211ENST00000589996 724 ntTSL 3 BASIC11.6□□□□□ -0.55
PRKDCP78527 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC11.6□□□□□ -0.55
PRKDCP78527 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms