Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 SLC4A1APP2-201ENST00000424054 1259 ntBASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 AC108751.1-201ENST00000490852 363 ntBASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 POLD4-207ENST00000531239 584 ntTSL 2 BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 RN7SL510P-201ENST00000581311 263 ntBASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 AC021097.1-201ENST00000607902 574 ntBASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 CDC14C-201ENST00000428251 1719 ntBASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
LIMCH1Q9UPQ0 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 AC112504.1-201ENST00000623415 1841 ntBASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 PPIE-208ENST00000470213 927 ntTSL 3 BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 AL160237.2-201ENST00000556165 472 ntBASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 AL049840.3-201ENST00000602669 611 ntBASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMCH1Q9UPQ0 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 AL513480.1-201ENST00000451731 511 ntBASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 AL031432.2-201ENST00000566714 459 ntBASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 AL928711.1-201ENST00000570165 459 ntBASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 MIR4751-201ENST00000578027 74 ntBASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 MIR3909-201ENST00000579518 119 ntBASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 AL031055.1-201ENST00000606362 631 ntBASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 AL773604.1-201ENST00000617417 272 ntBASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 AL031008.1-201ENST00000619963 541 ntBASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 AL645728.2-201ENST00000641974 660 ntBASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 LINC02447-202ENST00000501888 2146 ntBASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMCH1Q9UPQ0 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms