Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 CROCCP2-202ENST00000412962 2773 ntBASIC15.89■□□□□ 0.13
COL28A1Q2UY09 AC108860.2-201ENST00000562760 2183 ntBASIC15.89■□□□□ 0.13
COL28A1Q2UY09 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 ENSA-206ENST00000361631 725 ntTSL 2 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 API5-211ENST00000534695 560 ntTSL 5 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 AC011676.5-201ENST00000624864 2660 ntBASIC15.89■□□□□ 0.13
COL28A1Q2UY09 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
COL28A1Q2UY09 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 DGCR5-201ENST00000399539 862 ntBASIC15.88■□□□□ 0.13
COL28A1Q2UY09 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 AP006294.1-201ENST00000415407 339 ntBASIC15.88■□□□□ 0.13
COL28A1Q2UY09 AL353779.1-201ENST00000434793 351 ntBASIC15.88■□□□□ 0.13
COL28A1Q2UY09 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 TMEM261P1-201ENST00000604899 340 ntBASIC15.88■□□□□ 0.13
COL28A1Q2UY09 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 RETN-203ENST00000629642 400 ntTSL 5 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 AC129492.6-201ENST00000611383 1305 ntBASIC15.88■□□□□ 0.13
COL28A1Q2UY09 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 CICP6-201ENST00000457191 2729 ntBASIC15.88■□□□□ 0.13
COL28A1Q2UY09 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
COL28A1Q2UY09 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 OR6D1P-203ENST00000641209 4860 ntBASIC15.87■□□□□ 0.13
COL28A1Q2UY09 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL28A1Q2UY09 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms