Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
CKS1BP61024 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 KIF21B-204ENST00000461742 5428 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC11.66□□□□□ -0.54
CKS1BP61024 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
CKS1BP61024 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 AC005089.1-201ENST00000619486 2241 ntBASIC11.66□□□□□ -0.54
CKS1BP61024 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
CKS1BP61024 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC11.66□□□□□ -0.54
CKS1BP61024 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
CKS1BP61024 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC11.66□□□□□ -0.54
CKS1BP61024 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
CKS1BP61024 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC11.66□□□□□ -0.54
CKS1BP61024 AC005104.2-201ENST00000427818 678 ntBASIC11.66□□□□□ -0.54
CKS1BP61024 ECEL1P3-201ENST00000427961 737 ntBASIC11.66□□□□□ -0.54
CKS1BP61024 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC11.66□□□□□ -0.54
CKS1BP61024 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC11.66□□□□□ -0.54
CKS1BP61024 PPOX-214ENST00000535223 664 ntTSL 3 BASIC11.66□□□□□ -0.54
CKS1BP61024 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC11.66□□□□□ -0.54
CKS1BP61024 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC11.66□□□□□ -0.54
CKS1BP61024 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC11.66□□□□□ -0.54
CKS1BP61024 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC11.66□□□□□ -0.54
CKS1BP61024 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC11.66□□□□□ -0.54
CKS1BP61024 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC11.66□□□□□ -0.54
CKS1BP61024 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC11.66□□□□□ -0.54
CKS1BP61024 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC11.66□□□□□ -0.54
CKS1BP61024 ANKRD20A8P-203ENST00000641373 517 ntBASIC11.66□□□□□ -0.54
CKS1BP61024 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
CKS1BP61024 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
CKS1BP61024 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
CKS1BP61024 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 AC004817.3-201ENST00000602957 2129 ntBASIC11.66□□□□□ -0.54
CKS1BP61024 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC11.66□□□□□ -0.54
CKS1BP61024 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC11.66□□□□□ -0.54
CKS1BP61024 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CKS1BP61024 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
CKS1BP61024 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
CKS1BP61024 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC11.66□□□□□ -0.54
CKS1BP61024 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
CKS1BP61024 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CKS1BP61024 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
CKS1BP61024 TBC1D3P5-201ENST00000579401 1545 ntBASIC11.65□□□□□ -0.54
CKS1BP61024 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CKS1BP61024 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
CKS1BP61024 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CKS1BP61024 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.54
CKS1BP61024 AC116353.5-201ENST00000638148 1699 ntBASIC11.65□□□□□ -0.54
CKS1BP61024 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
CKS1BP61024 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC11.65□□□□□ -0.54
CKS1BP61024 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC11.65□□□□□ -0.54
CKS1BP61024 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CKS1BP61024 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC11.65□□□□□ -0.54
CKS1BP61024 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC11.65□□□□□ -0.54
CKS1BP61024 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CKS1BP61024 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
CKS1BP61024 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
CKS1BP61024 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CKS1BP61024 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
CKS1BP61024 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CKS1BP61024 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC11.65□□□□□ -0.54
CKS1BP61024 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CKS1BP61024 PC-208ENST00000529047 1607 ntTSL 3 BASIC11.65□□□□□ -0.54
CKS1BP61024 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CKS1BP61024 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC11.65□□□□□ -0.54
CKS1BP61024 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CKS1BP61024 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC11.65□□□□□ -0.54
CKS1BP61024 RHBDF1P1-201ENST00000427504 1941 ntBASIC11.65□□□□□ -0.54
CKS1BP61024 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC11.65□□□□□ -0.54
CKS1BP61024 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
CKS1BP61024 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CKS1BP61024 MYCLP1-201ENST00000372451 1075 ntBASIC11.65□□□□□ -0.54
CKS1BP61024 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
CKS1BP61024 CRAT-202ENST00000393384 973 ntTSL 2 BASIC11.65□□□□□ -0.54
CKS1BP61024 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC11.65□□□□□ -0.54
CKS1BP61024 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
CKS1BP61024 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
CKS1BP61024 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
CKS1BP61024 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
CKS1BP61024 DENND3-207ENST00000518347 850 ntTSL 2 BASIC11.65□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms