Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CIITAP33076 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.53■□□□□ 0.56
CIITAP33076 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.53■□□□□ 0.56
CIITAP33076 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CIITAP33076 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CIITAP33076 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CIITAP33076 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CIITAP33076 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CIITAP33076 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC18.53■□□□□ 0.56
CIITAP33076 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
CIITAP33076 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CIITAP33076 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CIITAP33076 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC18.52■□□□□ 0.56
CIITAP33076 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CIITAP33076 AC008677.1-201ENST00000519230 1561 ntBASIC18.52■□□□□ 0.56
CIITAP33076 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CIITAP33076 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC18.52■□□□□ 0.56
CIITAP33076 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CIITAP33076 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CIITAP33076 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CIITAP33076 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CIITAP33076 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CIITAP33076 SPDYE7P-202ENST00000420373 878 ntBASIC18.52■□□□□ 0.56
CIITAP33076 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC18.52■□□□□ 0.56
CIITAP33076 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC18.52■□□□□ 0.56
CIITAP33076 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC18.52■□□□□ 0.56
CIITAP33076 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC18.52■□□□□ 0.56
CIITAP33076 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC18.52■□□□□ 0.56
CIITAP33076 AC018529.1-201ENST00000613063 361 ntBASIC18.52■□□□□ 0.56
CIITAP33076 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CIITAP33076 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC18.52■□□□□ 0.56
CIITAP33076 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CIITAP33076 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CIITAP33076 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CIITAP33076 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CIITAP33076 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CIITAP33076 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CIITAP33076 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
CIITAP33076 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.55
CIITAP33076 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CIITAP33076 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.52■□□□□ 0.55
CIITAP33076 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CIITAP33076 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.52■□□□□ 0.55
CIITAP33076 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
CIITAP33076 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CIITAP33076 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CIITAP33076 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.51■□□□□ 0.55
CIITAP33076 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.51■□□□□ 0.55
CIITAP33076 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
CIITAP33076 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC18.51■□□□□ 0.55
CIITAP33076 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CIITAP33076 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC18.51■□□□□ 0.55
CIITAP33076 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CIITAP33076 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CIITAP33076 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CIITAP33076 HNRNPFP1-201ENST00000391730 1133 ntBASIC18.51■□□□□ 0.55
CIITAP33076 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CIITAP33076 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CIITAP33076 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC18.51■□□□□ 0.55
CIITAP33076 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC18.51■□□□□ 0.55
CIITAP33076 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC18.51■□□□□ 0.55
CIITAP33076 AC051619.7-201ENST00000568314 623 ntBASIC18.51■□□□□ 0.55
CIITAP33076 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC18.51■□□□□ 0.55
CIITAP33076 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CIITAP33076 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC18.51■□□□□ 0.55
CIITAP33076 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC18.51■□□□□ 0.55
CIITAP33076 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC18.51■□□□□ 0.55
CIITAP33076 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CIITAP33076 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
CIITAP33076 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CIITAP33076 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CIITAP33076 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.51■□□□□ 0.55
CIITAP33076 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CIITAP33076 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CIITAP33076 PCDHA14-201ENST00000506751 2298 ntBASIC18.51■□□□□ 0.55
CIITAP33076 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC18.51■□□□□ 0.55
CIITAP33076 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CIITAP33076 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC18.5■□□□□ 0.55
CIITAP33076 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC18.5■□□□□ 0.55
CIITAP33076 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CIITAP33076 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CIITAP33076 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CIITAP33076 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CIITAP33076 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CIITAP33076 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CIITAP33076 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CIITAP33076 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CIITAP33076 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CIITAP33076 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
CIITAP33076 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
CIITAP33076 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CIITAP33076 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC18.5■□□□□ 0.55
CIITAP33076 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC18.5■□□□□ 0.55
CIITAP33076 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC18.5■□□□□ 0.55
CIITAP33076 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CIITAP33076 RFPL4AP1-201ENST00000530883 850 ntBASIC18.5■□□□□ 0.55
CIITAP33076 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
CIITAP33076 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.5■□□□□ 0.55
CIITAP33076 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CIITAP33076 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms