Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 GCK-209ENST00000616242 2260 ntTSL 5 BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 CFL1-202ENST00000524553 860 ntTSL 2 BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
SMC4Q9NTJ3 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 ALG1L5P-201ENST00000482043 771 ntBASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 KRT18P34-201ENST00000488218 1270 ntBASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 AL161645.1-201ENST00000622716 1255 ntBASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 AC092902.6-201ENST00000641783 218 ntBASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 WASH6P-202ENST00000359512 1437 ntBASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC21.18■□□□□ 0.98
SMC4Q9NTJ3 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 YBX2P1-201ENST00000394192 760 ntBASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 POU5F1P6-201ENST00000466990 990 ntBASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMC4Q9NTJ3 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 TNRC18P3-201ENST00000441896 2691 ntBASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 DOC2GP-204ENST00000639052 2548 ntBASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 CYP2T1P-202ENST00000641596 2535 ntBASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms