Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
MSH6P52701 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC22.58■■□□□ 1.2
MSH6P52701 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
MSH6P52701 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
MSH6P52701 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH6P52701 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH6P52701 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH6P52701 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
MSH6P52701 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC22.57■■□□□ 1.2
MSH6P52701 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH6P52701 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH6P52701 ZBTB12BP-201ENST00000314232 1122 ntBASIC22.57■■□□□ 1.2
MSH6P52701 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
MSH6P52701 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC22.57■■□□□ 1.2
MSH6P52701 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH6P52701 HIST3H2BA-201ENST00000436555 524 ntBASIC22.57■■□□□ 1.2
MSH6P52701 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC22.57■■□□□ 1.2
MSH6P52701 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC22.57■■□□□ 1.2
MSH6P52701 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC22.57■■□□□ 1.2
MSH6P52701 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
MSH6P52701 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC22.57■■□□□ 1.2
MSH6P52701 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC22.57■■□□□ 1.2
MSH6P52701 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC22.57■■□□□ 1.2
MSH6P52701 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
MSH6P52701 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
MSH6P52701 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
MSH6P52701 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
MSH6P52701 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC22.57■■□□□ 1.2
MSH6P52701 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
MSH6P52701 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH6P52701 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC22.57■■□□□ 1.2
MSH6P52701 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC22.57■■□□□ 1.2
MSH6P52701 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
MSH6P52701 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
MSH6P52701 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC22.57■■□□□ 1.2
MSH6P52701 TUBB8P12-201ENST00000308911 1335 ntBASIC22.57■■□□□ 1.2
MSH6P52701 TUBB7P-202ENST00000428444 1305 ntBASIC22.57■■□□□ 1.2
MSH6P52701 TUBB8P7-204ENST00000567960 1332 ntBASIC22.57■■□□□ 1.2
MSH6P52701 AC116353.5-201ENST00000638148 1699 ntBASIC22.57■■□□□ 1.2
MSH6P52701 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH6P52701 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC22.56■■□□□ 1.2
MSH6P52701 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
MSH6P52701 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
MSH6P52701 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH6P52701 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH6P52701 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH6P52701 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH6P52701 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH6P52701 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH6P52701 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH6P52701 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
MSH6P52701 MIR663B-201ENST00000408361 115 ntBASIC22.56■■□□□ 1.2
MSH6P52701 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC22.56■■□□□ 1.2
MSH6P52701 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC22.56■■□□□ 1.2
MSH6P52701 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC22.56■■□□□ 1.2
MSH6P52701 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC22.56■■□□□ 1.2
MSH6P52701 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC22.56■■□□□ 1.2
MSH6P52701 DUX4L45-201ENST00000566406 1057 ntBASIC22.56■■□□□ 1.2
MSH6P52701 AL118558.3-201ENST00000607414 1079 ntBASIC22.56■■□□□ 1.2
MSH6P52701 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC22.56■■□□□ 1.2
MSH6P52701 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH6P52701 NOC2LP2-201ENST00000407594 1944 ntBASIC22.56■■□□□ 1.2
MSH6P52701 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH6P52701 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH6P52701 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH6P52701 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH6P52701 SNX33P1-201ENST00000592116 1762 ntBASIC22.55■■□□□ 1.2
MSH6P52701 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH6P52701 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
MSH6P52701 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH6P52701 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
MSH6P52701 FO393414.2-201ENST00000405153 598 ntBASIC22.55■■□□□ 1.2
MSH6P52701 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC22.55■■□□□ 1.2
MSH6P52701 FTH1P14-201ENST00000482930 551 ntBASIC22.55■■□□□ 1.2
MSH6P52701 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC22.55■■□□□ 1.2
MSH6P52701 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH6P52701 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC22.55■■□□□ 1.2
MSH6P52701 AL359711.2-201ENST00000563105 872 ntBASIC22.55■■□□□ 1.2
MSH6P52701 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
MSH6P52701 BRI3BPP1-201ENST00000594224 787 ntBASIC22.55■■□□□ 1.2
MSH6P52701 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
MSH6P52701 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH6P52701 AL133373.2-201ENST00000623187 2828 ntBASIC22.55■■□□□ 1.2
MSH6P52701 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC22.55■■□□□ 1.2
MSH6P52701 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
MSH6P52701 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH6P52701 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH6P52701 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH6P52701 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
MSH6P52701 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
MSH6P52701 AMT-232ENST00000636199 1546 ntTSL 5 BASIC22.54■■□□□ 1.2
MSH6P52701 AC068880.1-201ENST00000507289 2297 ntBASIC22.54■■□□□ 1.2
MSH6P52701 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
MSH6P52701 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
MSH6P52701 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
MSH6P52701 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
MSH6P52701 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
MSH6P52701 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC22.54■■□□□ 1.2
MSH6P52701 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC22.54■■□□□ 1.2
MSH6P52701 FAM86HP-204ENST00000513466 959 ntBASIC22.54■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms