Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.18■□□□□ 0.34
PTPN9P43378 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.18■□□□□ 0.34
PTPN9P43378 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.18■□□□□ 0.34
PTPN9P43378 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN9P43378 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC17.18■□□□□ 0.34
PTPN9P43378 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.18■□□□□ 0.34
PTPN9P43378 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.18■□□□□ 0.34
PTPN9P43378 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN9P43378 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN9P43378 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN9P43378 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN9P43378 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC17.18■□□□□ 0.34
PTPN9P43378 MKNK2P1-201ENST00000437526 628 ntBASIC17.18■□□□□ 0.34
PTPN9P43378 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.18■□□□□ 0.34
PTPN9P43378 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.18■□□□□ 0.34
PTPN9P43378 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.18■□□□□ 0.34
PTPN9P43378 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC17.18■□□□□ 0.34
PTPN9P43378 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN9P43378 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN9P43378 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN9P43378 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN9P43378 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN9P43378 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN9P43378 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.18■□□□□ 0.34
PTPN9P43378 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.18■□□□□ 0.34
PTPN9P43378 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
PTPN9P43378 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
PTPN9P43378 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
PTPN9P43378 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.18■□□□□ 0.34
PTPN9P43378 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN9P43378 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
PTPN9P43378 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.18■□□□□ 0.34
PTPN9P43378 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.18■□□□□ 0.34
PTPN9P43378 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN9P43378 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN9P43378 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
PTPN9P43378 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN9P43378 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN9P43378 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN9P43378 AC006449.6-201ENST00000612330 2296 ntBASIC17.17■□□□□ 0.34
PTPN9P43378 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.17■□□□□ 0.34
PTPN9P43378 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN9P43378 YBX2P1-201ENST00000394192 760 ntBASIC17.17■□□□□ 0.34
PTPN9P43378 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.17■□□□□ 0.34
PTPN9P43378 ACTG1P14-201ENST00000446382 1122 ntBASIC17.17■□□□□ 0.34
PTPN9P43378 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN9P43378 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.17■□□□□ 0.34
PTPN9P43378 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.17■□□□□ 0.34
PTPN9P43378 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN9P43378 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.17■□□□□ 0.34
PTPN9P43378 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.17■□□□□ 0.34
PTPN9P43378 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.17■□□□□ 0.34
PTPN9P43378 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.17■□□□□ 0.34
PTPN9P43378 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN9P43378 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.17■□□□□ 0.34
PTPN9P43378 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN9P43378 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
PTPN9P43378 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.17■□□□□ 0.34
PTPN9P43378 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
PTPN9P43378 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.17■□□□□ 0.34
PTPN9P43378 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC17.17■□□□□ 0.34
PTPN9P43378 AC073439.1-201ENST00000624121 1774 ntBASIC17.17■□□□□ 0.34
PTPN9P43378 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN9P43378 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN9P43378 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN9P43378 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
PTPN9P43378 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN9P43378 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN9P43378 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.16■□□□□ 0.34
PTPN9P43378 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.16■□□□□ 0.34
PTPN9P43378 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
PTPN9P43378 AL592424.1-201ENST00000563624 1536 ntBASIC17.16■□□□□ 0.34
PTPN9P43378 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN9P43378 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.16■□□□□ 0.34
PTPN9P43378 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN9P43378 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.16■□□□□ 0.34
PTPN9P43378 U82695.1-201ENST00000635752 1889 ntBASIC17.16■□□□□ 0.34
PTPN9P43378 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.16■□□□□ 0.34
PTPN9P43378 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC17.16■□□□□ 0.34
PTPN9P43378 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.16■□□□□ 0.34
PTPN9P43378 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN9P43378 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN9P43378 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
PTPN9P43378 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN9P43378 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN9P43378 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.16■□□□□ 0.34
PTPN9P43378 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
PTPN9P43378 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN9P43378 AL671277.1-201ENST00000429656 993 ntBASIC17.16■□□□□ 0.34
PTPN9P43378 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN9P43378 FAM86C2P-203ENST00000528684 1004 ntBASIC17.16■□□□□ 0.34
PTPN9P43378 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.16■□□□□ 0.34
PTPN9P43378 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN9P43378 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN9P43378 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC17.16■□□□□ 0.34
PTPN9P43378 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
PTPN9P43378 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
PTPN9P43378 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
PTPN9P43378 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
PTPN9P43378 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms