Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 MRPS18AP1-201ENST00000414458 589 ntBASIC16.09■□□□□ 0.17
LMX1AQ8TE12 TSSK5P-201ENST00000423978 907 ntBASIC16.09■□□□□ 0.17
LMX1AQ8TE12 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 AL589739.1-201ENST00000607720 493 ntBASIC16.09■□□□□ 0.17
LMX1AQ8TE12 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 AC022144.1-201ENST00000602255 1580 ntBASIC16.09■□□□□ 0.17
LMX1AQ8TE12 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
LMX1AQ8TE12 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.08■□□□□ 0.17
LMX1AQ8TE12 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 AL645728.1-201ENST00000366221 2101 ntBASIC16.08■□□□□ 0.16
LMX1AQ8TE12 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 AC005034.1-201ENST00000426657 489 ntBASIC16.08■□□□□ 0.16
LMX1AQ8TE12 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 RBM7-207ENST00000544582 692 ntTSL 3 BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 RN7SL828P-201ENST00000607615 303 ntBASIC16.08■□□□□ 0.16
LMX1AQ8TE12 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LMX1AQ8TE12 AC060834.1-201ENST00000443027 2032 ntBASIC16.07■□□□□ 0.16
LMX1AQ8TE12 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 AC105021.1-202ENST00000570572 669 ntBASIC16.07■□□□□ 0.16
LMX1AQ8TE12 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 AC009118.2-201ENST00000613275 655 ntBASIC16.07■□□□□ 0.16
LMX1AQ8TE12 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 AL035252.4-201ENST00000624174 288 ntBASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms