Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 FRMD8P1-201ENST00000440433 1524 ntBASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 MIR6805-201ENST00000615055 62 ntBASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC15.9■□□□□ 0.14
PCDHGA1Q9Y5H4 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
PCDHGA1Q9Y5H4 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 ACA64.2-201ENST00000459014 129 ntBASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 DOC2GP-202ENST00000514950 1163 ntBASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 BANF1P1-201ENST00000553684 263 ntBASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 AC008764.6-201ENST00000595909 2069 ntBASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PCDHGA1Q9Y5H4 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 PXK-206ENST00000463280 2825 ntTSL 2 BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 RPS2P32-201ENST00000439199 892 ntBASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 RNA5SP410-201ENST00000516285 106 ntBASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
PCDHGA1Q9Y5H4 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms