Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 TUBB3P1-201ENST00000405796 1332 ntBASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 SPDYE7P-202ENST00000420373 878 ntBASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 AC073389.1-201ENST00000595595 795 ntBASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 AL390955.2-201ENST00000603032 514 ntBASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 UXT-AS1-201ENST00000590504 1525 ntBASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAIPQ9BWF2 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 CDK2AP2P3-201ENST00000422476 372 ntBASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 SLC25A39P2-201ENST00000537614 270 ntBASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 AQP6-203ENST00000551733 849 ntTSL 3 BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 NKG7-205ENST00000600427 520 ntTSL 3 BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAIPQ9BWF2 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 AC106886.4-201ENST00000623557 2502 ntBASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 KLF2P3-201ENST00000451977 1087 ntBASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 RNA5SP421-201ENST00000516864 134 ntBASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 ALG1L8P-201ENST00000533887 760 ntBASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC18.15■□□□□ 0.5
TRAIPQ9BWF2 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms