Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
CUX1P39880 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC27.31■■□□□ 1.96
CUX1P39880 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC27.31■■□□□ 1.96
CUX1P39880 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC27.31■■□□□ 1.96
CUX1P39880 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC27.3■■□□□ 1.96
CUX1P39880 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC27.3■■□□□ 1.96
CUX1P39880 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CUX1P39880 DEK-201ENST00000244776 1441 ntTSL 2 BASIC27.3■■□□□ 1.96
CUX1P39880 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC27.3■■□□□ 1.96
CUX1P39880 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC27.3■■□□□ 1.96
CUX1P39880 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC27.3■■□□□ 1.96
CUX1P39880 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC27.3■■□□□ 1.96
CUX1P39880 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CUX1P39880 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC27.3■■□□□ 1.96
CUX1P39880 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
CUX1P39880 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC27.3■■□□□ 1.96
CUX1P39880 AL603756.1-201ENST00000606511 2163 ntBASIC27.3■■□□□ 1.96
CUX1P39880 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC27.3■■□□□ 1.96
CUX1P39880 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CUX1P39880 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC27.3■■□□□ 1.96
CUX1P39880 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC27.3■■□□□ 1.96
CUX1P39880 RN7SL399P-201ENST00000471648 279 ntBASIC27.3■■□□□ 1.96
CUX1P39880 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC27.3■■□□□ 1.96
CUX1P39880 SUOX-214ENST00000551841 906 ntTSL 3 BASIC27.3■■□□□ 1.96
CUX1P39880 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC27.3■■□□□ 1.96
CUX1P39880 AC036164.1-201ENST00000570544 333 ntBASIC27.3■■□□□ 1.96
CUX1P39880 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CUX1P39880 U82695.1-201ENST00000635752 1889 ntBASIC27.29■■□□□ 1.96
CUX1P39880 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
CUX1P39880 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CUX1P39880 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC27.29■■□□□ 1.96
CUX1P39880 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CUX1P39880 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CUX1P39880 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC27.29■■□□□ 1.96
CUX1P39880 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC27.29■■□□□ 1.96
CUX1P39880 TUBB1P2-201ENST00000422712 1306 ntBASIC27.29■■□□□ 1.96
CUX1P39880 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC27.29■■□□□ 1.96
CUX1P39880 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
CUX1P39880 TUBB1P1-201ENST00000503144 1300 ntBASIC27.29■■□□□ 1.96
CUX1P39880 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC27.29■■□□□ 1.96
CUX1P39880 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC27.29■■□□□ 1.96
CUX1P39880 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC27.29■■□□□ 1.96
CUX1P39880 MIR6869-201ENST00000619434 62 ntBASIC27.29■■□□□ 1.96
CUX1P39880 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC27.29■■□□□ 1.96
CUX1P39880 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC27.29■■□□□ 1.96
CUX1P39880 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC27.29■■□□□ 1.96
CUX1P39880 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CUX1P39880 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
CUX1P39880 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CUX1P39880 PCGF3-213ENST00000620529 1899 ntBASIC27.28■■□□□ 1.96
CUX1P39880 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC27.28■■□□□ 1.96
CUX1P39880 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC27.28■■□□□ 1.96
CUX1P39880 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC27.28■■□□□ 1.96
CUX1P39880 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC27.28■■□□□ 1.96
CUX1P39880 KRT8P44-201ENST00000441609 1350 ntBASIC27.28■■□□□ 1.96
CUX1P39880 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC27.28■■□□□ 1.96
CUX1P39880 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
CUX1P39880 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC27.28■■□□□ 1.96
CUX1P39880 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
CUX1P39880 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CUX1P39880 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC27.28■■□□□ 1.96
CUX1P39880 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC27.28■■□□□ 1.96
CUX1P39880 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC27.28■■□□□ 1.96
CUX1P39880 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC27.28■■□□□ 1.96
CUX1P39880 SPIB-207ENST00000597855 564 ntTSL 4 BASIC27.28■■□□□ 1.96
CUX1P39880 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC27.28■■□□□ 1.96
CUX1P39880 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC27.28■■□□□ 1.96
CUX1P39880 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC27.28■■□□□ 1.96
CUX1P39880 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC27.28■■□□□ 1.96
CUX1P39880 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC27.28■■□□□ 1.96
CUX1P39880 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC27.28■■□□□ 1.96
CUX1P39880 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
CUX1P39880 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC27.27■■□□□ 1.96
CUX1P39880 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CUX1P39880 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
CUX1P39880 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
CUX1P39880 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CUX1P39880 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC27.27■■□□□ 1.96
CUX1P39880 FAM8A2P-201ENST00000528813 1142 ntBASIC27.27■■□□□ 1.96
CUX1P39880 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC27.27■■□□□ 1.96
CUX1P39880 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC27.27■■□□□ 1.96
CUX1P39880 GPR182-203ENST00000622922 591 ntBASIC27.27■■□□□ 1.96
CUX1P39880 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC27.27■■□□□ 1.96
CUX1P39880 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC27.27■■□□□ 1.96
CUX1P39880 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC27.27■■□□□ 1.96
CUX1P39880 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CUX1P39880 GGT3P-204ENST00000453783 1664 ntBASIC27.27■■□□□ 1.96
CUX1P39880 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CUX1P39880 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CUX1P39880 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CUX1P39880 NOC2LP2-201ENST00000407594 1944 ntBASIC27.27■■□□□ 1.96
CUX1P39880 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC27.27■■□□□ 1.96
CUX1P39880 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.96
CUX1P39880 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC27.26■■□□□ 1.96
CUX1P39880 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.96
CUX1P39880 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC27.26■■□□□ 1.96
CUX1P39880 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC27.26■■□□□ 1.96
CUX1P39880 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC27.26■■□□□ 1.96
CUX1P39880 KRT43P-201ENST00000434019 910 ntBASIC27.26■■□□□ 1.96
CUX1P39880 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC27.26■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms