Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC14.47□□□□□ -0.09
COL8A1P27658 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL8A1P27658 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC14.47□□□□□ -0.09
COL8A1P27658 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC14.47□□□□□ -0.09
COL8A1P27658 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
COL8A1P27658 AC020907.1-201ENST00000616460 1350 ntBASIC14.47□□□□□ -0.09
COL8A1P27658 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC14.46□□□□□ -0.09
COL8A1P27658 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC14.46□□□□□ -0.09
COL8A1P27658 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
COL8A1P27658 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL8A1P27658 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.46□□□□□ -0.09
COL8A1P27658 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL8A1P27658 BTBD7P1-201ENST00000447253 1453 ntBASIC14.46□□□□□ -0.09
COL8A1P27658 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL8A1P27658 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL8A1P27658 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.46□□□□□ -0.09
COL8A1P27658 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
COL8A1P27658 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL8A1P27658 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.46□□□□□ -0.09
COL8A1P27658 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL8A1P27658 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC14.46□□□□□ -0.09
COL8A1P27658 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC14.46□□□□□ -0.09
COL8A1P27658 GOLGA2P4-201ENST00000441462 777 ntBASIC14.46□□□□□ -0.09
COL8A1P27658 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC14.46□□□□□ -0.09
COL8A1P27658 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC14.46□□□□□ -0.09
COL8A1P27658 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC14.46□□□□□ -0.09
COL8A1P27658 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.46□□□□□ -0.09
COL8A1P27658 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.46□□□□□ -0.09
COL8A1P27658 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC14.46□□□□□ -0.09
COL8A1P27658 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL8A1P27658 AL589935.2-201ENST00000616471 1231 ntBASIC14.46□□□□□ -0.09
COL8A1P27658 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC14.46□□□□□ -0.09
COL8A1P27658 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC14.46□□□□□ -0.09
COL8A1P27658 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL8A1P27658 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL8A1P27658 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL8A1P27658 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL8A1P27658 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC14.46□□□□□ -0.09
COL8A1P27658 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL8A1P27658 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL8A1P27658 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC14.46□□□□□ -0.1
COL8A1P27658 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC14.46□□□□□ -0.1
COL8A1P27658 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
COL8A1P27658 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC14.46□□□□□ -0.1
COL8A1P27658 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
COL8A1P27658 FOXO1B-201ENST00000504678 1527 ntBASIC14.46□□□□□ -0.1
COL8A1P27658 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
COL8A1P27658 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
COL8A1P27658 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL8A1P27658 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL8A1P27658 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL8A1P27658 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC14.45□□□□□ -0.1
COL8A1P27658 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC14.45□□□□□ -0.1
COL8A1P27658 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
COL8A1P27658 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
COL8A1P27658 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
COL8A1P27658 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL8A1P27658 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL8A1P27658 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL8A1P27658 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL8A1P27658 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC14.45□□□□□ -0.1
COL8A1P27658 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL8A1P27658 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL8A1P27658 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL8A1P27658 AC098850.1-201ENST00000419919 790 ntBASIC14.45□□□□□ -0.1
COL8A1P27658 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
COL8A1P27658 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC14.45□□□□□ -0.1
COL8A1P27658 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.45□□□□□ -0.1
COL8A1P27658 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL8A1P27658 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.45□□□□□ -0.1
COL8A1P27658 AC007389.4-201ENST00000454674 793 ntBASIC14.45□□□□□ -0.1
COL8A1P27658 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL8A1P27658 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL8A1P27658 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC14.45□□□□□ -0.1
COL8A1P27658 AC123567.1-201ENST00000548294 1261 ntBASIC14.45□□□□□ -0.1
COL8A1P27658 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC14.45□□□□□ -0.1
COL8A1P27658 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC14.45□□□□□ -0.1
COL8A1P27658 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC14.45□□□□□ -0.1
COL8A1P27658 AC103810.3-201ENST00000583567 96 ntBASIC14.45□□□□□ -0.1
COL8A1P27658 RPS24-214ENST00000613865 538 ntTSL 5 BASIC14.45□□□□□ -0.1
COL8A1P27658 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC14.45□□□□□ -0.1
COL8A1P27658 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC14.45□□□□□ -0.1
COL8A1P27658 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
COL8A1P27658 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL8A1P27658 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL8A1P27658 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC14.45□□□□□ -0.1
COL8A1P27658 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC14.45□□□□□ -0.1
COL8A1P27658 AC068880.1-201ENST00000507289 2297 ntBASIC14.45□□□□□ -0.1
COL8A1P27658 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL8A1P27658 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL8A1P27658 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC14.45□□□□□ -0.1
COL8A1P27658 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC14.45□□□□□ -0.1
COL8A1P27658 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL8A1P27658 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL8A1P27658 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL8A1P27658 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL8A1P27658 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
COL8A1P27658 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 PODN-203ENST00000395871 2744 ntTSL 5 BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms