Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 AC009407.1-201ENST00000568958 598 ntBASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 AL132655.2-201ENST00000596276 594 ntBASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 AC008738.7-201ENST00000609744 511 ntBASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 PGF-202ENST00000405431 666 ntTSL 5 BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 AC009477.1-201ENST00000452936 217 ntBASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 AC105233.2-201ENST00000523697 349 ntBASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 AF228730.5-201ENST00000530288 346 ntBASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 ARL16-202ENST00000570561 768 ntTSL 2 BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 AP001350.2-201ENST00000625104 1094 ntBASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIMD1Q9UGP4 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 TOP3BP1-201ENST00000420768 1380 ntBASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 GIMAP3P-201ENST00000495150 836 ntBASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 AC010336.2-201ENST00000564226 506 ntBASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 AC091167.2-201ENST00000579581 588 ntBASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIMD1Q9UGP4 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms