Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
HOXC4P09017 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
HOXC4P09017 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.12■□□□□ 0.17
HOXC4P09017 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.12■□□□□ 0.17
HOXC4P09017 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC4P09017 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC4P09017 AC090340.1-201ENST00000620778 4980 ntBASIC16.12■□□□□ 0.17
HOXC4P09017 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.11■□□□□ 0.17
HOXC4P09017 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC4P09017 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC4P09017 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.11■□□□□ 0.17
HOXC4P09017 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC4P09017 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC4P09017 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.11■□□□□ 0.17
HOXC4P09017 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC4P09017 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC4P09017 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC4P09017 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC4P09017 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC4P09017 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
HOXC4P09017 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC4P09017 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC4P09017 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC4P09017 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.11■□□□□ 0.17
HOXC4P09017 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
HOXC4P09017 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
HOXC4P09017 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC4P09017 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC4P09017 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.11■□□□□ 0.17
HOXC4P09017 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.11■□□□□ 0.17
HOXC4P09017 BANF1P1-201ENST00000553684 263 ntBASIC16.11■□□□□ 0.17
HOXC4P09017 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.11■□□□□ 0.17
HOXC4P09017 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.11■□□□□ 0.17
HOXC4P09017 AL365330.1-201ENST00000607459 531 ntBASIC16.11■□□□□ 0.17
HOXC4P09017 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.11■□□□□ 0.17
HOXC4P09017 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.11■□□□□ 0.17
HOXC4P09017 U82695.1-201ENST00000635752 1889 ntBASIC16.11■□□□□ 0.17
HOXC4P09017 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC4P09017 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC4P09017 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
HOXC4P09017 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC4P09017 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
HOXC4P09017 AC005622.1-201ENST00000636801 1703 ntBASIC16.11■□□□□ 0.17
HOXC4P09017 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC4P09017 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
HOXC4P09017 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC4P09017 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
HOXC4P09017 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.1■□□□□ 0.17
HOXC4P09017 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.1■□□□□ 0.17
HOXC4P09017 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.1■□□□□ 0.17
HOXC4P09017 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC4P09017 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC4P09017 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC4P09017 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC4P09017 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC4P09017 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.1■□□□□ 0.17
HOXC4P09017 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.1■□□□□ 0.17
HOXC4P09017 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC4P09017 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
HOXC4P09017 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.1■□□□□ 0.17
HOXC4P09017 IGHV3-42-201ENST00000520410 361 ntBASIC16.1■□□□□ 0.17
HOXC4P09017 AC027369.6-201ENST00000525520 931 ntBASIC16.1■□□□□ 0.17
HOXC4P09017 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.1■□□□□ 0.17
HOXC4P09017 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC4P09017 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
HOXC4P09017 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.1■□□□□ 0.17
HOXC4P09017 AC026979.3-201ENST00000607315 403 ntBASIC16.1■□□□□ 0.17
HOXC4P09017 AL133215.2-201ENST00000609242 977 ntBASIC16.1■□□□□ 0.17
HOXC4P09017 AL138828.2-201ENST00000615812 383 ntBASIC16.1■□□□□ 0.17
HOXC4P09017 AL590560.3-201ENST00000623350 461 ntBASIC16.1■□□□□ 0.17
HOXC4P09017 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
HOXC4P09017 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
HOXC4P09017 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC4P09017 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC4P09017 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.1■□□□□ 0.17
HOXC4P09017 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC4P09017 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
HOXC4P09017 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC4P09017 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
HOXC4P09017 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC4P09017 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
HOXC4P09017 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC4P09017 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC4P09017 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC4P09017 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC4P09017 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.1■□□□□ 0.17
HOXC4P09017 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
HOXC4P09017 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC4P09017 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC4P09017 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC4P09017 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.09■□□□□ 0.17
HOXC4P09017 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.09■□□□□ 0.17
HOXC4P09017 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.09■□□□□ 0.17
HOXC4P09017 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC4P09017 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC4P09017 CETN4P-206ENST00000642099 2168 ntBASIC16.09■□□□□ 0.17
HOXC4P09017 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC4P09017 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC4P09017 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
HOXC4P09017 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms