Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 MIR4259-201ENST00000584466 101 ntBASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC31.33■■■□□ 2.61
SHROOM4Q9ULL8 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC31.32■■■□□ 2.61
SHROOM4Q9ULL8 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 RPL37AP1-201ENST00000412502 279 ntBASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 TMEM14DP-201ENST00000422205 345 ntBASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 STARD13-205ENST00000439831 945 ntTSL 2 BASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC31.32■■■□□ 2.6
SHROOM4Q9ULL8 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC31.31■■■□□ 2.6
SHROOM4Q9ULL8 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC31.31■■■□□ 2.6
SHROOM4Q9ULL8 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC31.31■■■□□ 2.6
SHROOM4Q9ULL8 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SHROOM4Q9ULL8 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SHROOM4Q9ULL8 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC31.31■■■□□ 2.6
SHROOM4Q9ULL8 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SHROOM4Q9ULL8 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SHROOM4Q9ULL8 PP14571-201ENST00000404327 934 ntTSL 2 BASIC31.31■■■□□ 2.6
SHROOM4Q9ULL8 AC135586.1-201ENST00000539323 574 ntBASIC31.31■■■□□ 2.6
SHROOM4Q9ULL8 LITAF-210ENST00000571976 548 ntTSL 2 BASIC31.31■■■□□ 2.6
SHROOM4Q9ULL8 LITAF-214ENST00000574703 486 ntTSL 2 BASIC31.31■■■□□ 2.6
SHROOM4Q9ULL8 AC003101.2-201ENST00000612557 442 ntBASIC31.31■■■□□ 2.6
SHROOM4Q9ULL8 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SHROOM4Q9ULL8 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC31.31■■■□□ 2.6
SHROOM4Q9ULL8 AL023806.1-201ENST00000603994 1649 ntBASIC31.31■■■□□ 2.6
SHROOM4Q9ULL8 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC31.31■■■□□ 2.6
SHROOM4Q9ULL8 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
SHROOM4Q9ULL8 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
SHROOM4Q9ULL8 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
SHROOM4Q9ULL8 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SHROOM4Q9ULL8 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SHROOM4Q9ULL8 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC31.3■■■□□ 2.6
SHROOM4Q9ULL8 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SHROOM4Q9ULL8 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SHROOM4Q9ULL8 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
SHROOM4Q9ULL8 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SHROOM4Q9ULL8 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
SHROOM4Q9ULL8 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC31.3■■■□□ 2.6
SHROOM4Q9ULL8 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
SHROOM4Q9ULL8 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
SHROOM4Q9ULL8 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC31.3■■■□□ 2.6
SHROOM4Q9ULL8 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
SHROOM4Q9ULL8 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
SHROOM4Q9ULL8 SIGLEC29P-201ENST00000599873 1114 ntBASIC31.3■■■□□ 2.6
SHROOM4Q9ULL8 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SHROOM4Q9ULL8 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 FAM8A2P-201ENST00000528813 1142 ntBASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms