Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 AC026316.1-201ENST00000398900 414 ntBASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 AC019193.1-201ENST00000506678 823 ntBASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 AC012158.2-201ENST00000536546 354 ntBASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 AC103691.2-201ENST00000618824 433 ntBASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 ETV2-207ENST00000619399 994 ntTSL 5 BASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 AC005252.2-201ENST00000624630 1141 ntBASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC16.53■□□□□ 0.24
COL25A1Q9BXS0 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 AC012618.1-201ENST00000461223 412 ntBASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 AC024267.1-201ENST00000582320 895 ntBASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 AC092171.5-201ENST00000608012 942 ntBASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 DIO1-215ENST00000610607 796 ntTSL 5 BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 AL805961.1-201ENST00000642026 753 ntBASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL25A1Q9BXS0 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.52■□□□□ 0.23
COL25A1Q9BXS0 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL25A1Q9BXS0 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL25A1Q9BXS0 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.52■□□□□ 0.23
COL25A1Q9BXS0 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
COL25A1Q9BXS0 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL25A1Q9BXS0 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 MIR1202-201ENST00000408529 83 ntBASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 DNAJB1P1-201ENST00000429417 1024 ntBASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 BRI3P1-201ENST00000440440 378 ntBASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 HSPB1P2-201ENST00000448722 546 ntBASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 PPY2P-201ENST00000582808 702 ntBASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL25A1Q9BXS0 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms