Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 KRT18P13-201ENST00000400056 1290 ntBASIC16.54■□□□□ 0.24
VPS35Q96QK1 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 FAM58CP-201ENST00000435741 640 ntBASIC16.54■□□□□ 0.24
VPS35Q96QK1 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 AC005829.1-201ENST00000570002 483 ntBASIC16.54■□□□□ 0.24
VPS35Q96QK1 MIR3687-2-201ENST00000577708 61 ntBASIC16.54■□□□□ 0.24
VPS35Q96QK1 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 MIR3687-1-201ENST00000614492 61 ntBASIC16.54■□□□□ 0.24
VPS35Q96QK1 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 AL161645.1-201ENST00000622716 1255 ntBASIC16.54■□□□□ 0.24
VPS35Q96QK1 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS35Q96QK1 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS35Q96QK1 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.53■□□□□ 0.24
VPS35Q96QK1 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
VPS35Q96QK1 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.53■□□□□ 0.24
VPS35Q96QK1 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.53■□□□□ 0.24
VPS35Q96QK1 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
VPS35Q96QK1 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.53■□□□□ 0.24
VPS35Q96QK1 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
VPS35Q96QK1 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
VPS35Q96QK1 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.53■□□□□ 0.24
VPS35Q96QK1 RNF216P1-203ENST00000404404 2427 ntBASIC16.53■□□□□ 0.24
VPS35Q96QK1 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.53■□□□□ 0.24
VPS35Q96QK1 HTR5BP-201ENST00000430851 1154 ntBASIC16.53■□□□□ 0.24
VPS35Q96QK1 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.53■□□□□ 0.24
VPS35Q96QK1 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.53■□□□□ 0.24
VPS35Q96QK1 ALG1L5P-201ENST00000482043 771 ntBASIC16.53■□□□□ 0.24
VPS35Q96QK1 YBX1P5-201ENST00000509441 847 ntBASIC16.53■□□□□ 0.24
VPS35Q96QK1 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
VPS35Q96QK1 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.53■□□□□ 0.24
VPS35Q96QK1 AC010327.4-202ENST00000591484 748 ntBASIC16.53■□□□□ 0.24
VPS35Q96QK1 AC099522.2-201ENST00000607001 744 ntBASIC16.53■□□□□ 0.24
VPS35Q96QK1 AC092902.6-201ENST00000641783 218 ntBASIC16.53■□□□□ 0.24
VPS35Q96QK1 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS35Q96QK1 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
VPS35Q96QK1 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.53■□□□□ 0.24
VPS35Q96QK1 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms