Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 AC211486.1-202ENST00000416371 468 ntBASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 ACTG1P14-201ENST00000446382 1122 ntBASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 AC211476.1-201ENST00000503899 468 ntBASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 MIR4469-201ENST00000583919 79 ntBASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 AL009183.1-201ENST00000603760 355 ntBASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 AC006538.3-201ENST00000612495 578 ntBASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 AC139530.3-201ENST00000620344 690 ntBASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 AC055717.3-201ENST00000622967 595 ntBASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
PTCHD1Q96NR3 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PTCHD1Q96NR3 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
PTCHD1Q96NR3 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
PTCHD1Q96NR3 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PTCHD1Q96NR3 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC15.71■□□□□ 0.1
PTCHD1Q96NR3 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PTCHD1Q96NR3 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
PTCHD1Q96NR3 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 AC079328.2-201ENST00000561241 3354 ntBASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 ELL2P1-201ENST00000413990 1906 ntBASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 AL671710.1-201ENST00000610245 2349 ntBASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 PMS2P4-201ENST00000412466 1052 ntBASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 WDR53-204ENST00000433160 887 ntTSL 5 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 AC092902.6-201ENST00000641783 218 ntBASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms