Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 AC016027.1-202ENST00000607927 1699 ntBASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 CALY-202ENST00000368555 783 ntTSL 2 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 HCG4-201ENST00000418983 998 ntBASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 AC022494.1-201ENST00000466044 728 ntBASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 REEP4-207ENST00000523293 913 ntTSL 3 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 AL138828.2-201ENST00000615812 383 ntBASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 SPDYE12P-201ENST00000618416 771 ntBASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 LINC01451-201ENST00000623792 534 ntBASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.4■□□□□ 0.38
LIMD1Q9UGP4 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
LIMD1Q9UGP4 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.38
LIMD1Q9UGP4 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
LIMD1Q9UGP4 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
LIMD1Q9UGP4 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 U91328.1-201ENST00000437528 223 ntBASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 TMPRSS11CP-201ENST00000453277 683 ntBASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 IGHV3-71-201ENST00000523324 359 ntBASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
LIMD1Q9UGP4 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms