Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.28■□□□□ 0.36
NEK3P51956 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NEK3P51956 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.28■□□□□ 0.36
NEK3P51956 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
NEK3P51956 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.28■□□□□ 0.36
NEK3P51956 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
NEK3P51956 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
NEK3P51956 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
NEK3P51956 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
NEK3P51956 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
NEK3P51956 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
NEK3P51956 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.27■□□□□ 0.36
NEK3P51956 PCDHB17P-201ENST00000539533 2393 ntBASIC17.27■□□□□ 0.36
NEK3P51956 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.27■□□□□ 0.36
NEK3P51956 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.27■□□□□ 0.36
NEK3P51956 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.27■□□□□ 0.36
NEK3P51956 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.27■□□□□ 0.36
NEK3P51956 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.27■□□□□ 0.36
NEK3P51956 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.27■□□□□ 0.36
NEK3P51956 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.27■□□□□ 0.36
NEK3P51956 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
NEK3P51956 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
NEK3P51956 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
NEK3P51956 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
NEK3P51956 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.27■□□□□ 0.35
NEK3P51956 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.27■□□□□ 0.35
NEK3P51956 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
NEK3P51956 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
NEK3P51956 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NEK3P51956 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NEK3P51956 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
NEK3P51956 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
NEK3P51956 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.26■□□□□ 0.35
NEK3P51956 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
NEK3P51956 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
NEK3P51956 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
NEK3P51956 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.26■□□□□ 0.35
NEK3P51956 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
NEK3P51956 MIR1233-2-201ENST00000408138 82 ntBASIC17.26■□□□□ 0.35
NEK3P51956 MIR1233-1-201ENST00000408722 82 ntBASIC17.26■□□□□ 0.35
NEK3P51956 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
NEK3P51956 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.26■□□□□ 0.35
NEK3P51956 KRT18P2-201ENST00000447938 1258 ntBASIC17.26■□□□□ 0.35
NEK3P51956 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.26■□□□□ 0.35
NEK3P51956 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.26■□□□□ 0.35
NEK3P51956 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.26■□□□□ 0.35
NEK3P51956 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
NEK3P51956 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.26■□□□□ 0.35
NEK3P51956 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.26■□□□□ 0.35
NEK3P51956 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.26■□□□□ 0.35
NEK3P51956 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
NEK3P51956 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.26■□□□□ 0.35
NEK3P51956 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NEK3P51956 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NEK3P51956 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
NEK3P51956 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.26■□□□□ 0.35
NEK3P51956 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
NEK3P51956 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
NEK3P51956 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEK3P51956 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.25■□□□□ 0.35
NEK3P51956 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEK3P51956 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEK3P51956 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEK3P51956 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.25■□□□□ 0.35
NEK3P51956 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEK3P51956 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NEK3P51956 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.25■□□□□ 0.35
NEK3P51956 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NEK3P51956 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.25■□□□□ 0.35
NEK3P51956 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEK3P51956 EGFEM1P-202ENST00000431685 1563 ntBASIC17.25■□□□□ 0.35
NEK3P51956 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.25■□□□□ 0.35
NEK3P51956 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NEK3P51956 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEK3P51956 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEK3P51956 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEK3P51956 YBX2P1-201ENST00000394192 760 ntBASIC17.25■□□□□ 0.35
NEK3P51956 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.25■□□□□ 0.35
NEK3P51956 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
NEK3P51956 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.25■□□□□ 0.35
NEK3P51956 AC023274.1-201ENST00000418278 595 ntBASIC17.25■□□□□ 0.35
NEK3P51956 AC004832.2-201ENST00000426397 482 ntBASIC17.25■□□□□ 0.35
NEK3P51956 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.25■□□□□ 0.35
NEK3P51956 DNAJB3-201ENST00000446806 729 ntBASIC17.25■□□□□ 0.35
NEK3P51956 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
NEK3P51956 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.25■□□□□ 0.35
NEK3P51956 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.25■□□□□ 0.35
NEK3P51956 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NEK3P51956 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC17.25■□□□□ 0.35
NEK3P51956 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
NEK3P51956 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
NEK3P51956 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEK3P51956 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NEK3P51956 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
NEK3P51956 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEK3P51956 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NEK3P51956 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
NEK3P51956 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
NEK3P51956 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEK3P51956 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms